| Protein: | ARP5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 755 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..755] | [1..755] |
|
|
0.0 | [27..747] | [9..719] |
|
|
0.0 | [20..750] | [9..719] |
|
|
0.0 | [32..285] | [2..250] |
|
|
0.0 | [33..285] | [2..249] |
|
|
0.0 | [33..285] | [2..249] |
|
|
0.0 | [33..285] | [2..249] |
|
|
0.0 | [34..285] | [3..249] |
|
|
0.0 | [34..285] | [3..249] |
|
Region A: Residues: [1-279] |
1 11 21 31 41 51
| | | | | |
1 MSSRDASLTP LKAVVIDDPP LRQTPEPFDE QSAYNPQSPI AIDFGSSKLR AGFVNHATPT 60
61 HIFPNALTKF RDRKLNKNFT FVGNDTLLDQ AVRSQSRSPF DGPFVTNWNL TEEILDYTFH 120
121 HLGVVPDNGI PNPILLTERL ATVQSQRTNW YQILFETYNV PGVTFGIDSL FSFYNYNPSG 180
181 NKTGLVISCG HEDTNVIPVV DGAGILTDAK RINWGGHQAV DYLNDLMALK YPYFPTKMSY 240
241 LQYETMYKDY CYVSRNYDED IEKILTLENL DTNDVVVEA
|
| Detection Method: |  |
| Confidence: | 360.9897 |
| Match: | 1yagA_ |
| Description: | Actin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [280-593] |
1 11 21 31 41 51
| | | | | |
1 PFTEVLQPQK TEEELRIQAE KRKETGKRLQ EQARLKRMEK LVQKQEEFEY FSKVRDQLID 60
61 EPKKKVLSVL QNAGFDDERD FKKYLHSLEQ SLKKAQMVEA EDDSHLDEMN EDKTAQKFDL 120
121 LDIADEDLNE DQIKEKRKQR FLKASQDARQ KAKEEKERVA KEEEEKKLKE QQWRETDLNG 180
181 WIKDKRLKLN KLIKRRKEKL KLRDEMKDRK SQVSQNRMKN LASLAEDNVK QGAKRNRHQA 240
241 TIDNDPNDTF GANDEDWLIY TDITQNPEAF EEALEYEYKD IVELERLLLE HDPNFTEEDT 300
301 LEAQYDWRNS ILHL
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [594-755] |
1 11 21 31 41 51
| | | | | |
1 FLRGPRPHDS ENIHEQHQMH LNVERIRVPE VIFQPTMGGQ DQAGICELSE TILLKKFGSQ 60
61 PGKLSQTSID MVNNVLITGG NAKVPGLKER IVKEFTGFLP TGTNITVNMS SDPSLDAWKG 120
121 MAALARNEEQ YRKTVISKKE YEEYGPEYIK EHKLGNTKYF ED
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.322 | 0.444 | protein targeting to vacuole | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.369 | 0.093 | protein targeting to vacuole | c.26.1 | Nucleotidylyl transferase |
| View | Download | 0.389 | 0.038 | protein targeting to vacuole | c.10.2 | L domain-like |
| View | Download | 0.374 | 0.007 | protein targeting to vacuole | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.240 | N/A | N/A | a.118.18 | Cysteine rich protein B (HcpB) |
