| Protein: | SEC12 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 471 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC12.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [6..466] | [1069..1491] |
|
|
0.0 | [6..465] | [836..1257] |
|
Region A: Residues: [1-337] |
1 11 21 31 41 51
| | | | | |
1 MKFVTASYNV GYPAYGAKFL NNDTLLVAGG GGEGNNGIPN KLTVLRVDPT KDTEKEQFHI 60
61 LSEFALEDND DSPTAIDASK GIILVGCNEN STKITQGKGN KHLRKFKYDK VNDQLEFLTS 120
121 VDFDASTNAD DYTKLVYISR EGTVAAIASS KVPAIMRIID PSDLTEKFEI ETRGEVKDLH 180
181 FSTDGKVVAY ITGSSLEVIS TVTGSCIARK TDFDKNWSLS KINFIADDTV LIAASLKKGK 240
241 GIVLTKISIK SGNTSVLRSK QVTNRFKGIT SMDVDMKGEL AVLASNDNSI ALVKLKDLSM 300
301 SKIFKQAHSF AITEVTISPD STYVASVSAA NTIHIIK
|
| Detection Method: |  |
| Confidence: | 68.154902 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.61720914342874 | bayes_pls_golite062009 |
| binding | 1.40353148474598 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.949459052802047 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.876326238093745 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| protein transporter activity | 0.304681243699511 | bayes_pls_golite062009 |
| nucleic acid binding | 0.110806113669931 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.0294947647335083 | bayes_pls_golite062009 |
| hydrolase activity | 0.0078918747815433 | bayes_pls_golite062009 |
|
Region A: Residues: [338-471] |
1 11 21 31 41 51
| | | | | |
1 LPLNYANYTS MKQKISKFFT NFILIVLLSY ILQFSYKHNL HSMLFNYAKD NFLTKRDTIS 60
61 SPYVVDEDLH QTTLFGNHGT KTSVPSVDSI KVHGVHETSS VNGTEVLCTE SNIINTGGAE 120
121 FEITNATFRE IDDA
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
