YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAU20
Organism: Saccharomyces cerevisiae
Length: 120 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAU20.

Description E-value Query
Range
Subject
Range
PAU4_YEAST - Seripauperin-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAU4 PE=3 SV=1
PAU4 - Member of the seripauperin multigene family encoded mainly in subtelomeric regions; active during al...
166.0 [0..1] [120..1]

Back

Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLTSIAAG VAAIAAGASA TTTLAQSDER VNLVELGVYV SDIRAHLAQY YMFQAAHPTE  60
   61 TYPVEVAEAV FNYGDFTTML TGISPDQVTR MITGVPWYST RLKPAISKAL SKDGIYTIAN 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 62.853872
Match: PF00660.8
Description: No description for PF00660.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.945 N/A N/A a.216.1 Description not found.
View Download 0.933 N/A N/A a.29.13 Description not found.
View Download 0.894 N/A N/A a.29.13 Description not found.
View Download 0.823 N/A N/A a.216.1 Description not found.
View Download 0.805 N/A N/A a.216.1 Description not found.
View Download 0.714 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.714 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.693 N/A N/A a.25.1 Ferritin-like
View Download 0.669 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.558 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle