Protein: | UBP2 |
Organism: | Saccharomyces cerevisiae |
Length: | 1272 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1272] | [1..1272] |
|
0.0 | [26..1272] | [12..1218] |
|
0.0 | [442..1270] | [324..1136] |
|
4.0E-51 | [686..1256] | [117..655] |
|
2.0E-47 | [627..938] | [161..429] |
Region A: Residues: [1-616] |
1 11 21 31 41 51 | | | | | | 1 MPNEDNELQK AIENHHNQLL NQDKENADRN GSVIEDLPLY GTSINQQSTP GDVDDGKHLL 60 61 YPDIATNLPL KTSDRLLDDI LCDTIFLNST DPKVMQKGLQ SRGILKESML SYSTFRSSIR 120 121 PNCLGSLTDQ VVFQTKSEYD SISCPKYNKI HVFQAVIFNP SLAEQQISTF DDIVKIPIYH 180 181 LKVSVKVRQE LERLKKHVGV TQFHSLDHLH EYDRVDLSTF DSSDPNLLDY GIYVSDDTNK 240 241 LILIEIFKPE FNSPEEHESF TADAIKKRYN AMCVKNESLD KSETPSQVDC FYTLFKIFKG 300 301 PLTRKSKAEP TKTIDSGNLA LNTHLNPEWL TSKYGFQASS EIDEETNEIF TEYVPPDMVD 360 361 YVNDLETRKI RESFVRKCLQ LIFWGQLSTS LLAPNSPLKN TKSVKGMSSL QTSFSTLPWF 420 421 HLLGESRARI LLNSNEQTHS PLDAEPHFIN LSVSHYYTDR DIIRNYESLS SLDPENIGLY 480 481 FDALTYIANR KGAYQLIAYC GKQDIIGQEA LENALLMFKI NPKECNISEL NEATLLSIYK 540 541 YETSNKSQVT SNHLTNLKNA LRLLAKYTKS DKLKFYVDHE PYRALSQAYD TLSIDESVDE 600 601 DIIKTAYSVK INDSPG |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [617-722] |
1 11 21 31 41 51 | | | | | | 1 LKLDCDRALY TIAISKRSLD LFNFLTEECP QFSNYYGPEK LDYQEALKLL QVNENASDET 60 61 ILKIFKQKWF DENVYEPDQF LILRAALTKI SIERNSTLIT NFLLTG |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.893 | 0.067 | protein deubiquitination | a.118.9 | ENTH/VHS domain |
Region A: Residues: [723-786] |
1 11 21 31 41 51 | | | | | | 1 TIDPNSLPPE NWPTGINNIG NTCYLNSLLQ YYFSIAPLRR YVLEYQKTVE NFNDHLSNSG 60 61 HIRR |
Detection Method: | |
Confidence: | 13.69897 |
Match: | PF00442 |
Description: | No description for PF00442 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [787-838] |
1 11 21 31 41 51 | | | | | | 1 IGGREISRGE VERSIQFIYQ LRNLFYAMVH TRERCVTPSK ELAYLAFAPS NV |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [839-1184] |
1 11 21 31 41 51 | | | | | | 1 EVEFEVEGNK VVDQTGVLSD SKKETTDDAF TTKIKDTSLI DLEMEDGLNG DVGTDANRKK 60 61 NESNDAEVSE NEDTTGLTSP TRVAKISSDQ LENALEMGRQ QDVTECIGNV LFQIESGSEP 120 121 IRYDEDNEQY DLVKQLFYGT TKQSIVPLSA TNKVRTKVER FLSLLINIGD HPKDIYDAFD 180 181 SYFKDEYLTM EEYGDVIRTV AVTTFPTILQ VQIQRVYYDR ERLMPFKSIE PLPFKEVIYM 240 241 DRYADTENPL LLAKKKETEE MKQKLKVMKN RQRELLSRDD SGLTRKDAFL ESIKLLESDT 300 301 IKKTPLKIEA ANDVIKTLRN NVQNIDNELM KLYNDINSLE EKISHQ |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1185-1272] |
1 11 21 31 41 51 | | | | | | 1 FDDFKEYGYS LFSVFIHRGE ASYGHYWIYI KDRNRNGIWR KYNDETISEV QEEEVFNFNE 60 61 GNTATPYFLV YVKQGQEGDI EPLKRILK |
Detection Method: | |
Confidence: | 23.886057 |
Match: | PF00443 |
Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1152-1272] |
1 11 21 31 41 51 | | | | | | 1 VIKTLRNNVQ NIDNELMKLY NDINSLEEKI SHQFDDFKEY GYSLFSVFIH RGEASYGHYW 60 61 IYIKDRNRNG IWRKYNDETI SEVQEEEVFN FNEGNTATPY FLVYVKQGQE GDIEPLKRIL 120 121 K |
Detection Method: | |
Confidence: | 36.0 |
Match: | 2aynA |
Description: | Structure of USP14, a proteasome-associated deubiquitinating enzyme |
Matching Structure (courtesy of the PDB): |