| Protein: | UBP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1272 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1272] | [1..1272] |
|
|
0.0 | [26..1272] | [12..1218] |
|
|
0.0 | [442..1270] | [324..1136] |
|
|
4.0E-51 | [686..1256] | [117..655] |
|
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2.0E-47 | [627..938] | [161..429] |
|
Region A: Residues: [1-616] |
1 11 21 31 41 51
| | | | | |
1 MPNEDNELQK AIENHHNQLL NQDKENADRN GSVIEDLPLY GTSINQQSTP GDVDDGKHLL 60
61 YPDIATNLPL KTSDRLLDDI LCDTIFLNST DPKVMQKGLQ SRGILKESML SYSTFRSSIR 120
121 PNCLGSLTDQ VVFQTKSEYD SISCPKYNKI HVFQAVIFNP SLAEQQISTF DDIVKIPIYH 180
181 LKVSVKVRQE LERLKKHVGV TQFHSLDHLH EYDRVDLSTF DSSDPNLLDY GIYVSDDTNK 240
241 LILIEIFKPE FNSPEEHESF TADAIKKRYN AMCVKNESLD KSETPSQVDC FYTLFKIFKG 300
301 PLTRKSKAEP TKTIDSGNLA LNTHLNPEWL TSKYGFQASS EIDEETNEIF TEYVPPDMVD 360
361 YVNDLETRKI RESFVRKCLQ LIFWGQLSTS LLAPNSPLKN TKSVKGMSSL QTSFSTLPWF 420
421 HLLGESRARI LLNSNEQTHS PLDAEPHFIN LSVSHYYTDR DIIRNYESLS SLDPENIGLY 480
481 FDALTYIANR KGAYQLIAYC GKQDIIGQEA LENALLMFKI NPKECNISEL NEATLLSIYK 540
541 YETSNKSQVT SNHLTNLKNA LRLLAKYTKS DKLKFYVDHE PYRALSQAYD TLSIDESVDE 600
601 DIIKTAYSVK INDSPG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [617-722] |
1 11 21 31 41 51
| | | | | |
1 LKLDCDRALY TIAISKRSLD LFNFLTEECP QFSNYYGPEK LDYQEALKLL QVNENASDET 60
61 ILKIFKQKWF DENVYEPDQF LILRAALTKI SIERNSTLIT NFLLTG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.893 | 0.067 | protein deubiquitination | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [723-786] |
1 11 21 31 41 51
| | | | | |
1 TIDPNSLPPE NWPTGINNIG NTCYLNSLLQ YYFSIAPLRR YVLEYQKTVE NFNDHLSNSG 60
61 HIRR
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [787-838] |
1 11 21 31 41 51
| | | | | |
1 IGGREISRGE VERSIQFIYQ LRNLFYAMVH TRERCVTPSK ELAYLAFAPS NV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [839-1184] |
1 11 21 31 41 51
| | | | | |
1 EVEFEVEGNK VVDQTGVLSD SKKETTDDAF TTKIKDTSLI DLEMEDGLNG DVGTDANRKK 60
61 NESNDAEVSE NEDTTGLTSP TRVAKISSDQ LENALEMGRQ QDVTECIGNV LFQIESGSEP 120
121 IRYDEDNEQY DLVKQLFYGT TKQSIVPLSA TNKVRTKVER FLSLLINIGD HPKDIYDAFD 180
181 SYFKDEYLTM EEYGDVIRTV AVTTFPTILQ VQIQRVYYDR ERLMPFKSIE PLPFKEVIYM 240
241 DRYADTENPL LLAKKKETEE MKQKLKVMKN RQRELLSRDD SGLTRKDAFL ESIKLLESDT 300
301 IKKTPLKIEA ANDVIKTLRN NVQNIDNELM KLYNDINSLE EKISHQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1185-1272] |
1 11 21 31 41 51
| | | | | |
1 FDDFKEYGYS LFSVFIHRGE ASYGHYWIYI KDRNRNGIWR KYNDETISEV QEEEVFNFNE 60
61 GNTATPYFLV YVKQGQEGDI EPLKRILK
|
| Detection Method: | |
| Confidence: | 23.886057 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1152-1272] |
1 11 21 31 41 51
| | | | | |
1 VIKTLRNNVQ NIDNELMKLY NDINSLEEKI SHQFDDFKEY GYSLFSVFIH RGEASYGHYW 60
61 IYIKDRNRNG IWRKYNDETI SEVQEEEVFN FNEGNTATPY FLVYVKQGQE GDIEPLKRIL 120
121 K
|
| Detection Method: | |
| Confidence: | 36.0 |
| Match: | 2aynA |
| Description: | Structure of USP14, a proteasome-associated deubiquitinating enzyme |
Matching Structure (courtesy of the PDB): |
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