Protein: | RUP1 |
Organism: | Saccharomyces cerevisiae |
Length: | 671 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUP1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..652] | [1..652] |
Region A: Residues: [1-67] |
1 11 21 31 41 51 | | | | | | 1 MMDNQAVKSL LEMGIPHEVA VDALQRTGGN LEAAVNFIFS NELPEQAEMG EENDGSQPRI 60 61 SENKIVA |
Detection Method: | |
Confidence: | 7.619789 |
Match: | PF00627 |
Description: | UBA/TS-N domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [68-671] |
1 11 21 31 41 51 | | | | | | 1 GTKPCDVPNN GDQDIDMPDV SGVDVDYDDD EDITDERSGS NSTSGCRVTA QNYDRYSISE 60 61 TSIPPPSYSI VQHNEFKSNV GDPTVVLPLP LNSLIESYFG LFALLTAVYF PHVFLKPDFK 120 121 DLNYRADWFK GSSFTEPKYR LAYCEAEDGS TTSEIVLASG PNEGLQPHLL WQLQKLISVV 180 181 NTRKCERAFV SAKVFTSSLE PQLRSKLADS EHLYEVLPAF IKSLAVDLEM CPGIRDRETR 240 241 SLFISSALHT PNKNEPPMET FLSLFHFLPE EYDSNLYKMF NVLLYPEEEE EEEDVIRGGE 300 301 QEEARYVEPE NTLKEVAPVL TILFNELETN TESVSLPNGV DIPLEFYPQL YTKQCKDQLI 360 361 RHIISKRKQA RTRSRCLLQE INELKSYQGK NISTILESTL AYLQTIPDDA NNEAAKQIAS 420 421 LKDTLNSARA AKMEEYKDLA SKLHGEWNLS HPETHIINTA KQLGLIENPY ILTMAALSPY 480 481 SYFIRSRNGA WSWIQSNTLG TEFKVKKCSS PSVVQEAIKH GTKYASETPL MFIYCEEGKI 540 541 PTEEVVAEAL KSNSGCLKFA EDDQNSLKTL RSQFFDGMGD PEQATNNINN GNDNDNDDDI 600 601 DSDN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [149-671] |
1 11 21 31 41 51 | | | | | | 1 DPTVVLPLPL NSLIESYFGL FALLTAVYFP HVFLKPDFKD LNYRADWFKG SSFTEPKYRL 60 61 AYCEAEDGST TSEIVLASGP NEGLQPHLLW QLQKLISVVN TRKCERAFVS AKVFTSSLEP 120 121 QLRSKLADSE HLYEVLPAFI KSLAVDLEMC PGIRDRETRS LFISSALHTP NKNEPPMETF 180 181 LSLFHFLPEE YDSNLYKMFN VLLYPEEEEE EEDVIRGGEQ EEARYVEPEN TLKEVAPVLT 240 241 ILFNELETNT ESVSLPNGVD IPLEFYPQLY TKQCKDQLIR HIISKRKQAR TRSRCLLQEI 300 301 NELKSYQGKN ISTILESTLA YLQTIPDDAN NEAAKQIASL KDTLNSARAA KMEEYKDLAS 360 361 KLHGEWNLSH PETHIINTAK QLGLIENPYI LTMAALSPYS YFIRSRNGAW SWIQSNTLGT 420 421 EFKVKKCSSP SVVQEAIKHG TKYASETPLM FIYCEEGKIP TEEVVAEALK SNSGCLKFAE 480 481 DDQNSLKTLR SQFFDGMGDP EQATNNINNG NDNDNDDDID SDN |
Detection Method: | |
Confidence: | 3.1 |
Match: | 1nb8A |
Description: | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
cysteine-type peptidase activity | 6.0242292884398 | bayes_pls_golite062009 |
small conjugating protein-specific protease activity | 5.90858078304578 | bayes_pls_golite062009 |
ubiquitin-specific protease activity | 5.44933450089323 | bayes_pls_golite062009 |
ubiquitin thiolesterase activity | 3.74006277974234 | bayes_pls_golite062009 |
SUMO-specific protease activity | 2.21040757005122 | bayes_pls_golite062009 |
thiolester hydrolase activity | 2.11491900255607 | bayes_pls_golite062009 |
binding | 1.33631135736211 | bayes_pls_golite062009 |
catalytic activity | 0.995453662223124 | bayes_pls_golite062009 |
protein binding | 0.971758173254614 | bayes_pls_golite062009 |
peptidase activity | 0.906081979704688 | bayes_pls_golite062009 |
peptidase activity, acting on L-amino acid peptides | 0.771565725012421 | bayes_pls_golite062009 |
hydrolase activity | 0.60043152196744 | bayes_pls_golite062009 |
nucleic acid binding | 0.457218859985687 | bayes_pls_golite062009 |
NEDD8-specific protease activity | 0.286821085697906 | bayes_pls_golite062009 |
DNA binding | 0.178287899185051 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.153973186741348 | bayes_pls_golite062009 |
endopeptidase activity | 0.134447097497472 | bayes_pls_golite062009 |
cysteine-type endopeptidase activity | 0.0340549989533036 | bayes_pls_golite062009 |