| Protein: | RUP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 671 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..652] | [1..652] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MMDNQAVKSL LEMGIPHEVA VDALQRTGGN LEAAVNFIFS NELPEQAEMG EENDGSQPRI 60
61 SENKIVA
|
| Detection Method: |  |
| Confidence: | 7.619789 |
| Match: | PF00627 |
| Description: | UBA/TS-N domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [68-671] |
1 11 21 31 41 51
| | | | | |
1 GTKPCDVPNN GDQDIDMPDV SGVDVDYDDD EDITDERSGS NSTSGCRVTA QNYDRYSISE 60
61 TSIPPPSYSI VQHNEFKSNV GDPTVVLPLP LNSLIESYFG LFALLTAVYF PHVFLKPDFK 120
121 DLNYRADWFK GSSFTEPKYR LAYCEAEDGS TTSEIVLASG PNEGLQPHLL WQLQKLISVV 180
181 NTRKCERAFV SAKVFTSSLE PQLRSKLADS EHLYEVLPAF IKSLAVDLEM CPGIRDRETR 240
241 SLFISSALHT PNKNEPPMET FLSLFHFLPE EYDSNLYKMF NVLLYPEEEE EEEDVIRGGE 300
301 QEEARYVEPE NTLKEVAPVL TILFNELETN TESVSLPNGV DIPLEFYPQL YTKQCKDQLI 360
361 RHIISKRKQA RTRSRCLLQE INELKSYQGK NISTILESTL AYLQTIPDDA NNEAAKQIAS 420
421 LKDTLNSARA AKMEEYKDLA SKLHGEWNLS HPETHIINTA KQLGLIENPY ILTMAALSPY 480
481 SYFIRSRNGA WSWIQSNTLG TEFKVKKCSS PSVVQEAIKH GTKYASETPL MFIYCEEGKI 540
541 PTEEVVAEAL KSNSGCLKFA EDDQNSLKTL RSQFFDGMGD PEQATNNINN GNDNDNDDDI 600
601 DSDN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [149-671] |
1 11 21 31 41 51
| | | | | |
1 DPTVVLPLPL NSLIESYFGL FALLTAVYFP HVFLKPDFKD LNYRADWFKG SSFTEPKYRL 60
61 AYCEAEDGST TSEIVLASGP NEGLQPHLLW QLQKLISVVN TRKCERAFVS AKVFTSSLEP 120
121 QLRSKLADSE HLYEVLPAFI KSLAVDLEMC PGIRDRETRS LFISSALHTP NKNEPPMETF 180
181 LSLFHFLPEE YDSNLYKMFN VLLYPEEEEE EEDVIRGGEQ EEARYVEPEN TLKEVAPVLT 240
241 ILFNELETNT ESVSLPNGVD IPLEFYPQLY TKQCKDQLIR HIISKRKQAR TRSRCLLQEI 300
301 NELKSYQGKN ISTILESTLA YLQTIPDDAN NEAAKQIASL KDTLNSARAA KMEEYKDLAS 360
361 KLHGEWNLSH PETHIINTAK QLGLIENPYI LTMAALSPYS YFIRSRNGAW SWIQSNTLGT 420
421 EFKVKKCSSP SVVQEAIKHG TKYASETPLM FIYCEEGKIP TEEVVAEALK SNSGCLKFAE 480
481 DDQNSLKTLR SQFFDGMGDP EQATNNINNG NDNDNDDDID SDN
|
| Detection Method: | |
| Confidence: | 3.1 |
| Match: | 1nb8A |
| Description: | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cysteine-type peptidase activity | 6.0242292884398 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 5.90858078304578 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 5.44933450089323 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 3.74006277974234 | bayes_pls_golite062009 |
| SUMO-specific protease activity | 2.21040757005122 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 2.11491900255607 | bayes_pls_golite062009 |
| binding | 1.33631135736211 | bayes_pls_golite062009 |
| catalytic activity | 0.995453662223124 | bayes_pls_golite062009 |
| protein binding | 0.971758173254614 | bayes_pls_golite062009 |
| peptidase activity | 0.906081979704688 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.771565725012421 | bayes_pls_golite062009 |
| hydrolase activity | 0.60043152196744 | bayes_pls_golite062009 |
| nucleic acid binding | 0.457218859985687 | bayes_pls_golite062009 |
| NEDD8-specific protease activity | 0.286821085697906 | bayes_pls_golite062009 |
| DNA binding | 0.178287899185051 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.153973186741348 | bayes_pls_golite062009 |
| endopeptidase activity | 0.134447097497472 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 0.0340549989533036 | bayes_pls_golite062009 |
