YRC Public Data Repository - Protein Structure Prediction

Protein:	RRS1
Organism:	Saccharomyces cerevisiae
Length:	203 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRS1.

Description	E-value	Query Range	Subject Range
RRS1 - Essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre... gi\|190407595 - gi\|190407595\|gb\|EDV10862.1\| regulator of ribosome biosynthesis [Saccharomyces cerevisiae RM11-1a] RRS1_YEAST - Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRS1 ... gi\|151945376 - gi\|151945376\|gb\|EDN63619.1\| regulator of ribosome synthesis [Saccharomyces cerevisiae YJM789]	2.0E-75	[1..203]	[1..203]
RRS1 - RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) gi\|123984836, gi... - gi\|168274376\|dbj\|BAG09608.1\| ribosome biogenesis regulatory protein homolog [synthetic construct], g...	7.0E-61	[11..202]	[58..230]
gi\|7670442, gi\|1... - gi\|7670442\|dbj\|BAA95072.1\| unnamed protein product [Mus musculus], gi\|10946930\|ref\|NP_067486.1\| RRS1...	7.0E-58	[11..202]	[24..196]
RRS1_ARATH - Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2	4.0E-50	[20..202]	[12..176]
rrbs-1 - Human HA0609 protein like status:Confirmed UniProt:Q9XVT0 protein_id:CAB02731.1	1.0E-45	[13..203]	[8..174]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEDYKNLP VTVEKPIPVV YDLGNLAAFD SNVLDKNDLD SSNARREEKI KSLTRDNVQL  60
   61 LINQLLSLPM KTTTESVGGT GGQSSVMTLL QLPDPTTDLP REKPLPKAKA MTKWEKFAAK 120
  121 KGIKPKERAG KMIYD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EASGEWVPKW GYKGANKKLD DQWLVEVDDK VKGTDNELID PRTLNRAERK RLVKKNEKQQ  60
   61 RRNMKNAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits