YRC Public Data Repository - Protein Structure Prediction

Protein:	SCP1
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP1.

Description	E-value	Query Range	Subject Range
CNN2 - calponin 2 CNN2_PONPY - Calponin-2 - Pongo pygmaeus (Orangutan) CNN2_PONAB - Calponin-2 OS=Pongo abelii GN=CNN2 PE=2 SV=3	3.0E-64	[2..199]	[4..190]
CNN2_MOUSE - Calponin-2 OS=Mus musculus GN=Cnn2 PE=1 SV=1	5.0E-64	[2..199]	[4..190]
gi\|1070615 - pir\|\|S31483 calponin H2 - pig (fragment) CNN2_PIG - Calponin-2 (Fragment) OS=Sus scrofa GN=CNN2 PE=2 SV=1	1.0E-62	[2..199]	[4..190]
CNN3_RAT - Calponin-3 OS=Rattus norvegicus GN=Cnn3 PE=1 SV=1	2.0E-62	[1..199]	[1..188]
gi\|31419012, gi\|... - gi\|41054309\|ref\|NP_956047.1\| calponin 3, acidic a [Danio rerio], gi\|31419012\|gb\|AAH53309.1\| Calponin...	4.0E-62	[1..199]	[1..188]
gi\|148238279, gi... - gi\|27695146\|gb\|AAH43808.1\| Cnn3-prov protein [Xenopus laevis], gi\|148238279\|ref\|NP_001080482.1\| calp...	4.0E-62	[1..199]	[1..188]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDKKADVT SLDEDLRQLR ESKFSPEAIQ NIKIWVYKSV LKEIAPPGDL LECLKDGTVL  60
   61 CKLANILYEA DTGEANHISW KSSKMPFVQM DQISQFLSFS RKYGVPEDEL FQTIDLFEKK 120
  121 DPAIVFQTLK SLSRYANKKH TDRFPVLGPQ LSTKKPRPPV KSKPKHLQDG TGWSTFEYGY 180
  181 MKGASQATEG VVLGQRRDIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.457575
Match:	1h67A_
Description:	Calponin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits