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View Structure Prediction Details

Protein: SCP1
Organism: Saccharomyces cerevisiae
Length: 200 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP1.

Description E-value Query
Range
Subject
Range
CNN2 - calponin 2
CNN2_PONPY - Calponin-2 - Pongo pygmaeus (Orangutan)
CNN2_PONAB - Calponin-2 OS=Pongo abelii GN=CNN2 PE=2 SV=3
3.0E-64 [2..199] [4..190]
CNN2_MOUSE - Calponin-2 OS=Mus musculus GN=Cnn2 PE=1 SV=1
5.0E-64 [2..199] [4..190]
gi|1070615 - pir||S31483 calponin H2 - pig (fragment)
CNN2_PIG - Calponin-2 (Fragment) OS=Sus scrofa GN=CNN2 PE=2 SV=1
1.0E-62 [2..199] [4..190]
CNN3_RAT - Calponin-3 OS=Rattus norvegicus GN=Cnn3 PE=1 SV=1
2.0E-62 [1..199] [1..188]
gi|31419012, gi|... - gi|41054309|ref|NP_956047.1| calponin 3, acidic a [Danio rerio], gi|31419012|gb|AAH53309.1| Calponin...
4.0E-62 [1..199] [1..188]
gi|148238279, gi... - gi|27695146|gb|AAH43808.1| Cnn3-prov protein [Xenopus laevis], gi|148238279|ref|NP_001080482.1| calp...
4.0E-62 [1..199] [1..188]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDKKADVT SLDEDLRQLR ESKFSPEAIQ NIKIWVYKSV LKEIAPPGDL LECLKDGTVL  60
   61 CKLANILYEA DTGEANHISW KSSKMPFVQM DQISQFLSFS RKYGVPEDEL FQTIDLFEKK 120
  121 DPAIVFQTLK SLSRYANKKH TDRFPVLGPQ LSTKKPRPPV KSKPKHLQDG TGWSTFEYGY 180
  181 MKGASQATEG VVLGQRRDIV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.457575
Match: 1h67A_
Description: Calponin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle