| Protein: | AEP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 606 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AEP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [33..601] | [58..597] |
|
|
0.0 | [36..601] | [63..599] |
|
|
0.0 | [1..605] | [62..648] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNTLRCLTQA LSKSGREAPK LYQKVIFPGL FREGIPIANV KKVDEKIIDS PTSTSVNGEA 60
61 KKIVRHGVKY EREQVKEYLS SLPTLTLSRK QIRDDYDEER AKRMYMFSKQ TNSSNKFQKL 120
121 LTAKSQEFTR ELLTLLID
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.211 | 0.592 | mRNA metabolic process | a.118.1 | ARM repeat |
| View | Download | 0.218 | 0.009 | extrinsic to membrane | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.231 | 0.003 | extrinsic to membrane | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.226 | 0.001 | extrinsic to membrane | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.211 | N/A | N/A | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [139-345] |
1 11 21 31 41 51
| | | | | |
1 CTSNEKNSGP ERFTRKFLKF SNDEIPPLPD FSKNPQLFEN YIGILSHTKF NFRSSSKLNG 60
61 IVRKMLRHLL HPTNKTTLPL RSAQVYNDSI YFFSEHFDFA SCREIFAQMK AEGTKPNTIT 120
121 FNLLLRNVVK NSHIRKTKHP DDEVLFYLRS MRNHGVFADV ITWTTCYNFL RDEVSRQLYI 180
181 VQMGEHLGNF NVNFVYTVLR NGDYRAE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.231 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.226 | N/A | N/A | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.226 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.218 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.211 | N/A | N/A | a.118.1 | ARM repeat |
|
Region A: Residues: [346-463] |
1 11 21 31 41 51
| | | | | |
1 DCLKVLAANS LPISRKTFYL CIERLLNEEQ LETASKLLDY GFQHLKSNFK LDSEAMNHFM 60
61 RVFANKGRSD LAFLCYNTCR KIYKIKPDSQ TFEMLFKALV RNGNTKNFGA VLQYIKDL
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1na0A_ |
| Description: | Designed protein cTPR3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.69757163267229 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.967526235944614 | bayes_pls_golite062009 |
| protein binding | 0.931467806305272 | bayes_pls_golite062009 |
| RNA binding | 0.675746721046834 | bayes_pls_golite062009 |
| transcription regulator activity | 0.663212626739423 | bayes_pls_golite062009 |
| nucleic acid binding | 0.54028771192401 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 0.465749123849318 | bayes_pls_golite062009 |
| hydrolase activity | 0.443144569020145 | bayes_pls_golite062009 |
| DNA binding | 0.36234393273743 | bayes_pls_golite062009 |
|
Region A: Residues: [464-606] |
1 11 21 31 41 51
| | | | | |
1 KVSEGFGLRT SYWRTKADSI FKFGSPNTLS EKSIEKARKL LGNLIASEGE FSWKIWKESD 60
61 SSQKKILRFL GCIPTTLRCT NTAQDHQKPT NLPSNISQKK REYRNRVKAI ATKAALEKRM 120
121 AYIKDNDVAF KKELVKRRIV GEV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.285 | 0.618 | mitochondrial inner membrane | a.24.3 | Cytochromes |
| View | Download | 0.330 | 0.116 | mitochondrial inner membrane | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.290 | 0.044 | extrinsic to membrane | a.39.1 | EF-hand |
| View | Download | 0.375 | 0.001 | extrinsic to membrane | a.63.1 | Apolipophorin-III |
| View | Download | 0.286 | N/A | N/A | a.183.1 | Nop domain |
| View | Download | 0.273 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.271 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
