YRC Public Data Repository - Protein Structure Prediction

Protein:	BTS1
Organism:	Saccharomyces cerevisiae
Length:	335 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BTS1.

Description	E-value	Query Range	Subject Range
gi\|18893173, gi\|... - gi\|18977474\|ref\|NP_578831.1\| bifunctional short chain isoprenyl diphosphate synthase [Pyrococcus fur...	1.0E-83	[1..323]	[9..340]
gi\|14521122, gi\|... - gi\|5458339\|emb\|CAB49828.1\| idsA-like multifunctional short chain isoprenyl diphosphate synthase [Pyr... gi\|5458339, gi\|7... - pir\|\|C75139 bifunctional short chain isoprenyl diphosphate synthase (idsa) PAB2389 - Pyrococcus aby...	3.0E-83	[1..323]	[15..346]
gi\|7447574, gi\|9... - gi\|90108478\|pdb\|1WY0\|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Py... gi\|14590908, gi\|... - gi\|90108478\|pdb\|1WY0\|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Py...	1.0E-82	[1..323]	[11..342]
gi\|205354206, gi... - gi\|205354206\|ref\|YP_002228007.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enteric... gi\|197364164, gi... - gi\|197364164\|ref\|YP_002143801.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enteric... gi\|213646987 - gi\|213646987\|ref\|ZP_03377040.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica... gi\|213426652 - gi\|213426652\|ref\|ZP_03359402.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica... gi\|213053033 - gi\|213053033\|ref\|ZP_03345911.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica... gi\|207858553, gi... - gi\|207858553\|ref\|YP_002245204.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enteric... gi\|238910099 - gi\|238910099\|ref\|ZP_04653936.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica... gi\|25314317, gi\|... - gi\|25314317\|pir\|\|AH0903 octaprenyl-diphosphate synthase [imported] - Salmonella enterica subsp. ente... gi\|16421862, gi\|... - gi\|16766600\|ref\|NP_462215.1\| octaprenyl diphosphate synthase [Salmonella typhimurium LT2], gi\|164218... gi\|56415234, gi\|... - gi\|56415234\|ref\|YP_152309.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... gi\|29143556, gi\|... - gi\|29143556\|ref\|NP_806898.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... gi\|16762067 - gi\|16762067\|ref\|NP_457684.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... gi\|214000941 - gi\|214000941\|ref\|ZP_03411676.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica...	3.0E-82	[3..321]	[12..321]
gi\|19887236, gi\|... - gi\|20094211\|ref\|NP_614058.1\| geranylgeranyl pyrophosphate synthase [Methanopyrus kandleri AV19], gi\|...	3.0E-82	[1..321]	[16..322]
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	4.0E-82	[1..283]	[84..364]
gi\|20135548 - gi\|20135548\|gb\|AAM08927.1\| farnesyl pyrophosphate synthase [Malus x domestica]	5.0E-82	[7..321]	[18..340]
gi\|26110199, gi\|... - gi\|26249771\|ref\|NP_755811.1\| octaprenyl diphosphate synthase [Escherichia coli CFT073], gi\|26110199\|...	8.0E-82	[3..321]	[12..321]
gi\|75228148 - gi\|75228148\|ref\|ZP_00714813.1\| COG0142: Geranylgeranyl pyrophosphate synthase [Escherichia coli B7A] gi\|75511910, gi\|... - gi\|75511910\|ref\|ZP_00734522.1\| COG0142: Geranylgeranyl pyrophosphate synthase [Escherichia coli 5363... gi\|194439175, gi... - gi\|83585435\|ref\|ZP_00924081.1\| COG0142: Geranylgeranyl pyrophosphate synthase [Escherichia coli 101-... gi\|157155105, gi... - gi\|75187993\|ref\|ZP_00701260.1\| COG0142: Geranylgeranyl pyrophosphate synthase [Escherichia coli E243... gi\|89109950, gi\|... - gi\|89109950\|ref\|AP_003730.1\| octaprenyl diphosphate synthase [Escherichia coli str. K-12 substr. W31... gi\|74313724, gi\|... - gi\|74313724\|ref\|YP_312143.1\| octaprenyl diphosphate synthase [Shigella sonnei Ss046], gi\|73857201\|gb... gi\|81246986, gi\|... - gi\|82545575\|ref\|YP_409522.1\| octaprenyl diphosphate synthase [Shigella boydii Sb227], gi\|81246986\|gb... gi\|110807053, gi... - gi\|110807053\|ref\|YP_690573.1\| octaprenyl diphosphate synthase [Shigella flexneri 5 str. 8401], gi\|11... gi\|238902289, gi... - gi\|238902289\|ref\|YP_002928085.1\| octaprenyl diphosphate synthase [Escherichia coli BW2952], gi\|23886... gi\|242378730, gi... - gi\|251786457\|ref\|YP_003000761.1\| hypothetical protein B21_03003 [Escherichia coli BL21], gi\|24237873... gi\|253323023, gi... - gi\|254289879\|ref\|YP_003055627.1\| octaprenyl diphosphate synthase [Escherichia coli BL21(DE3)], gi\|25... gi\|254163129, gi... - gi\|254163129\|ref\|YP_003046237.1\| octaprenyl diphosphate synthase [Escherichia coli B str. REL606], g... ISPB_ECOLI - Octaprenyl-diphosphate synthase (EC 2.5.1.-) (Octaprenyl pyrophosphate synthetase) (OPP synthetase) ... gi\|170765991, gi... - gi\|170765991\|ref\|ZP_02900802.1\| octaprenyl-diphosphate synthase [Escherichia albertii TW07627], gi\|1... ISPB_SHIFL - Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1 gi\|169890557, gi... - gi\|170082722\|ref\|YP_001732042.1\| octaprenyl diphosphate synthase [Escherichia coli str. K-12 substr.... gi\|209920662, gi... - gi\|209920662\|ref\|YP_002294746.1\| octaprenyl diphosphate synthase [Escherichia coli SE11], gi\|2099139... gi\|194417271, gi... - gi\|194434492\|ref\|ZP_03066752.1\| octaprenyl-diphosphate synthase [Shigella dysenteriae 1012], gi\|1944... EG10017 - octaprenyl diphosphate synthase / Octaprenyl diphosphate synthase, isoprenoid biosynthesis gi\|218353624, gi... - gi\|218696892\|ref\|YP_002404559.1\| octaprenyl diphosphate synthase [Escherichia coli 55989], gi\|218353... gi\|218555757, gi... - gi\|218555757\|ref\|YP_002388670.1\| octaprenyl diphosphate synthase [Escherichia coli IAI1], gi\|2183625... gi\|24114476, gi\|... - gi\|24114476\|ref\|NP_708986.1\| octaprenyl diphosphate synthase [Shigella flexneri 2a str. 301], gi\|240... gi\|218706807, gi... - gi\|218706807\|ref\|YP_002414326.1\| octaprenyl diphosphate synthase [Escherichia coli UMN026], gi\|21843... gi\|30042784, gi\|... - gi\|30064525\|ref\|NP_838696.1\| octaprenyl diphosphate synthase [Shigella flexneri 2a str. 2457T], gi\|3... gi\|218701956, gi... - gi\|218701956\|ref\|YP_002409585.1\| octaprenyl diphosphate synthase [Escherichia coli IAI39], gi\|218371... gi\|169753491, gi... - gi\|170018563\|ref\|YP_001723517.1\| octaprenyl diphosphate synthase [Escherichia coli ATCC 8739], gi\|16... EG10017 - octaprenyl diphosphate synthase / Octaprenyl diphosphate synthase, isoprenoid biosynthesis	9.0E-82	[3..321]	[12..321]
gi\|217327318, gi... - gi\|217327318\|ref\|ZP_03443401.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. TW145... gi\|209396313, gi... - gi\|209396313\|ref\|YP_002272657.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC41... gi\|208738597, gi... - gi\|208818474\|ref\|ZP_03258794.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC404... gi\|189001013, gi... - gi\|189001013\|gb\|EDU69999.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4076], ... gi\|254795136, gi... - gi\|254795136\|ref\|YP_003079973.1\| octaprenyl diphosphate synthase [Escherichia coli O157:H7 str. TW14... gi\|187766779, gi... - gi\|187766779\|gb\|EDU30623.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4196], ... gi\|168769043, gi... - gi\|189361792\|gb\|EDU80211.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4486], ... gi\|189364885, gi... - gi\|189364885\|gb\|EDU83301.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4501], ... gi\|208813351, gi... - gi\|208813351\|ref\|ZP_03254680.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC404... gi\|195940043 - gi\|195940043\|ref\|ZP_03085425.1\| octaprenyl diphosphate synthase [Escherichia coli O157:H7 str. EC402... gi\|168800901, gi... - gi\|189376838\|gb\|EDU95254.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC508], g... gi\|168786073, gi... - gi\|189374093\|gb\|EDU92509.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC869], g... gi\|189358538, gi... - gi\|189358538\|gb\|EDU76957.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4401], ... gi\|188014375, gi... - gi\|188014375\|gb\|EDU52497.1\| octaprenyl-diphosphate synthase [Escherichia coli O157:H7 str. EC4113], ... gi\|15833320, gi\|... - gi\|15833320\|ref\|NP_312093.1\| octaprenyl diphosphate synthase [Escherichia coli O157:H7], gi\|13363539... gi\|209758172, gi... - pir\|\|E85982 octaprenyl diphosphate synthase [imported] - Escherichia coli (strain O157:H7, substrain... gi\|15803727, gi\|... - gi\|15803727\|ref\|NP_289761.1\| octaprenyl diphosphate synthase [Escherichia coli O157:H7 EDL933], gi\|1... gi\|15833320, gi\|... - gi\|15833320\|ref\|NP_312093.1\| octaprenyl diphosphate synthase [Escherichia coli O157:H7 str. Sakai], ...	2.0E-81	[3..321]	[12..321]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKIDELIN NDPVWSSQNE SLISKPYNHI LLKPGKNFRL NLIVQINRVM NLPKDQLAIV  60
   61 SQIVELLHNS SLLIDDIEDN APLRRGQTTS HLIFGVPSTI NTANYMYFRA MQLVSQLTTK 120
  121 EPLYHNLITI FNEELINLHR GQG

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [167-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTGGLFRL TLRLMEALSP SSHHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.917458
Match:	1ubx__
Description:	Farnesyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [144-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDIYWRDFLP EIIPTQEMYL NMV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [192-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSLVPFINLL GIIYQIRDDY LNLKDFQMSS EKGFAEDITE GKLSFPIVHA LNFTKTKGQT  60
   61 EQHNEILRIL LLRTSDKDIK LKLIQILEFD TNSLAYTKNF INQLVNMIKN DNENKYLPDL 120
  121 ASHSDTATNL HDELLYIIDH LSEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.917458
Match:	1ubx__
Description:	Farnesyl diphosphate synthase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits