YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL108W
Organism:	Saccharomyces cerevisiae
Length:	168 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL108W.

Description	E-value	Query Range	Subject Range
YP108_YEAST - Uncharacterized protein YPL108W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL108W ... gi\|190407848 - gi\|190407848\|gb\|EDV11113.1\| hypothetical protein SCRG_02387 [Saccharomyces cerevisiae RM11-1a] YPL108W - Cytoplasmic protein of unknown function; non-essential gene that is induced in a GDH1 deleted strain...	4.0E-93	[1..168]	[1..168]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEASDREEA PKMVEKNYST GFRKAHGEKD QSVTKPISLD GRTGEVIVRK STGKTKIRKG  60
   61 QTEEEYTQQL QHYFEVEQGP VRTKVGWMDE VDPLVEIREG KYDISNKHQR QVLSGFCHRL 120
  121 FYQCKYKECL DLSTYFLGLF EPFNVKNKMK RELEELEYMI ERCRGHVL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits