Protein: | HAA1 |
Organism: | Saccharomyces cerevisiae |
Length: | 694 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAA1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..694] | [1..694] |
|
1.0E-53 | [1..263] | [1..248] |
|
5.0E-40 | [2..109] | [1..99] |
|
5.0E-28 | [1..212] | [1..200] |
|
3.0E-24 | [1..70] | [1..70] |
|
1.0E-21 | [1..95] | [1..73] |
Region A: Residues: [1-84] |
1 11 21 31 41 51 | | | | | | 1 MVLINGIKYA CERCIRGHRV TTCNHTDQPL MMIKPKGRPS TTCDYCKQLR KNKNANPEGV 60 61 CTCGRLEKKK LAQKAKEEAR AKAK |
Detection Method: | |
Confidence: | 117.0 |
Match: | 1co4A_ |
Description: | Zinc domain conserved in yeast copper-regulated transcription factors |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA polymerase II transcription factor activity | 3.46199909835403 | bayes_pls_golite062009 |
transcription regulator activity | 3.44900037030135 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 2.99240619437226 | bayes_pls_golite062009 |
binding | 2.00508289492248 | bayes_pls_golite062009 |
ligand-regulated transcription factor activity | 0.749213234767051 | bayes_pls_golite062009 |
Region A: Residues: [85-694] |
1 11 21 31 41 51 | | | | | | 1 EKQRKQCTCG TDEVCKYHAQ KRHLRKSPSS SQKKGRSISR SQPMFERVLS STSLDSNMLS 60 61 GHGALSDTSS ILTSTFLDSE PGVGKISKDY HHVPSLASIS SLQSSQSLDQ NFSIPQSPPL 120 121 SSMSFNFLTG NINETNQNHS NHQHSKSGNN WQDSSVSLPA KADSRLNMMD KNNSVGLDLL 180 181 GHSKRISPIS NSRVGEVSVP LEEYIPSDID GVGRVTDKSS LVYDWPFDES IERNFSTTAT 240 241 AATGESKFDI NDNCNRINSK SYSKTNSMNG NGMNNSNNNN INSNGNDKNN NNSSRQEHQG 300 301 NGLFDMFTDS SSISTLSRAN LLLQEKIGSQ ENSVKQENYS KNPQLRHQLT SRSRSFIHHP 360 361 ANEYLKNTFG NSHSNDIGKG VEVLSLTPSF MDIPEKERET ERSPSSNYIT DRPFTRKPRS 420 421 SSIDVNHRYP PMAPTTVATS PGALNNAVAS NLDDQLSLTS LNSQPSSIAN MMMDPSNLAE 480 481 QSSIHSVPQS INSPRMPKTG SRQDKNIHTK KEERNPLNNI HDLSQLENVP DEMNQMFSPP 540 541 LKSMNRPDAI RENSSSSNFI IQGNSMISTP SGRNDLPDTS PMSSIQTASP PSQLLTDQGF 600 601 ADLDNFMSSL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.