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View Structure Prediction Details

Protein: gi|38327615, gi|...
Organism: Homo sapiens
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38327615, gi|....

Description E-value Query
Range
Subject
Range
gi|74315943, gi|... - gi|74315943|ref|NP_001028277.1| ERGIC and golgi 3 isoform 1 [Danio rerio], gi|72679324|gb|AAI00126.1...
0.0 [1..388] [1..388]
gi|62646208, gi|... - gi|62646208|ref|XP_215908.3| PREDICTED: similar to serologically defined breast cancer antigen 84 is...
0.0 [1..388] [56..443]
gi|109092200 - gi|109092200|ref|XP_001098885.1| PREDICTED: ERGIC and golgi 3 isoform 2 [Macaca mulatta]
0.0 [1..388] [1..388]
gi|22760064 - gi|22760064|dbj|BAC11054.1| unnamed protein product [Homo sapiens]
0.0 [1..388] [1..388]
ERGI3_XENLA - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1
0.0 [1..388] [1..389]
ERGI3_PONPY - Endoplasmic reticulum-Golgi intermediate compartment protein 3 - Pongo pygmaeus (Orangutan)
ERGI3_PONAB - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
0.0 [1..388] [1..383]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALGKLKQF DAYPKTLEDF RVKTCGGATV TIVSGLLMLL LFLSELQYYL TTEVHPELYV  60
   61 DKSRGDKLKI NIDVLFPHMP CAYLSIDAMD VAGEQQLDVE HNLFKQRLDK DGIPVSSEAE 120
  121 RHELGKVEVT VFDPDSLDPD RCESC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGAEAEDIKC CNTCEDVREA YRRRGWAFKN PDTIEQCRRE GFSQKMQEQK NEGCQVYGFL  60
   61 EVNKVAGNFH FAPGKSFQQS HVHVHAVEIH DLQSFGLD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [244-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NINMTHYIQH LSFGEDYPGI VNPLDHTNVT APQASMMFQY FVKVVPTVYM KVDGEVLRTN  60
   61 QFSVTRHEKV ANGLLGDQGL PGVFVLYELS PMMVKLTEKH RSFTHFLTGV CAIIGGMFTV 120
  121 AGLIDSLIYH SARAIQKKID LGKTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle