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View Structure Prediction Details

Protein: FLT1
Organism: Homo sapiens
Length: 1338 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLT1.

Description E-value Query
Range
Subject
Range
gi|114649218 - gi|114649218|ref|XP_509605.2| PREDICTED: hypothetical protein [Pan troglodytes]
839.0 [0..1] [1338..1]
gi|109120359 - gi|109120359|ref|XP_001117928.1| PREDICTED: fms-related tyrosine kinase 1 (vascular endothelial grow...
827.0 [0..1] [1338..144]
FLT1 - fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor recep...
823.0 [0..1] [1338..1]
gi|73993482 - gi|73993482|ref|XP_534520.2| PREDICTED: similar to Vascular endothelial growth factor receptor 1 pre...
800.0 [0..1] [1338..1]
VGFR1_RAT - Vascular endothelial growth factor receptor 1 OS=Rattus norvegicus GN=Flt1 PE=2 SV=1
789.0 [0..1] [1337..1]
gi|34328180, gi|... - gi|34328180|ref|NP_034358.2| fms-related tyrosine kinase 1 [Mus musculus], gi|2809069|dbj|BAA24498.1...
785.0 [0..1] [1337..1]
VGFR1_CHICK - Vascular endothelial growth factor receptor 1 OS=Gallus gallus GN=FLT1 PE=2 SV=1
710.0 [0..11] [1338..9]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSYWDTGVL LCALLSCLLL TGSSSGSKLK DPELSLKGTQ HIMQAGQTLH LQCRGEAAHK  60
   61 WSLPEMVSKE SERLSITKSA CGRNGKQFCS TLTLNTAQAN HTGFYSCKYL AVPTSKKKET 120
  121 ESAIYIFISD TG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.27
Match: 1fhgA
Description: Telokin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [133-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPFVEMYSEI PEIIHMTEGR ELVIPCRVTS PNITVTLKKF PLDTLIPDGK RIIWDSRKGF  60
   61 IISNATYKEI GLLTCEATVN GHLYKTNYLT HRQTNT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.30103
Match: 1qsvA
Description: Second domain of the Flt-1 receptor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [229-659]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIDVQISTPR PVKLLRGHTL VLNCTATTPL NTRVQMTWSY PDEKNKRASV RRRIDQSNSH  60
   61 ANIFYSVLTI DKMQNKDKGL YTCRVRSGPS FKSVNTSVHI YDKAFITVKH RKQQVLETVA 120
  121 GKRSYRLSMK VKAFPSPEVV WLKDGLPATE KSARYLTRGY SLIIKDVTEE DAGNYTILLS 180
  181 IKQSNVFKNL TATLIVNVKP QIYEKAVSSF PDPALYPLGS RQILTCTAYG IPQPTIKWFW 240
  241 HPCNHNHSEA RCDFCSNNEE SFILDADSNM GNRIESITQR MAIIEGKNKM ASTLVVADSR 300
  301 ISGIYICIAS NKVGTVGRNI SFYITDVPNG FHVNLEKMPT EGEDLKLSCT VNKFLYRDVT 360
  361 WILLRTVNNR TMHYSISKQK MAITKEHSIT LNLTIMNVSL QDSGTYACRA RNVYTGEEIL 420
  421 QKKEITIRDQ E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2gy5A
Description: No description for 2gy5A was found.

Predicted Domain #4
Region A:
Residues: [660-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APYLLRNLSD HTVAISSSTT LDCHANGVPE PQITWFKNNH KIQQEPGIIL GPGSSTLFIE  60
   61 RVTEEDEGVY HCKATNQKGS VESSAYLTVQ GTSDKSNLEL ITLTCTCVAA TLFWLLLTLL 120
  121 IRKMKRSSSE IKTDYLSIIM 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.17
Match: 2iepA
Description: No description for 2iepA was found.

Predicted Domain #5
Region A:
Residues: [800-888]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPDEVPLDEQ CERLPYDASK WEFARERLKL GKSLGRGAFG KVVQASAFGI KKSPTCRTVA  60
   61 VKMLKEGATA SEYKALMTEL KILTHIGHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.221849
Match: 1y6aA
Description: Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [889-1338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNVVNLLGAC TKQGGPLMVI VEYCKYGNLS NYLKSKRDLF FLNKDAALHM EPKKEKMEPG  60
   61 LEQGKKPRLD SVTSSESFAS SGFQEDKSLS DVEEEEDSDG FYKEPITMED LISYSFQVAR 120
  121 GMEFLSSRKC IHRDLAARNI LLSENNVVKI CDFGLARDIY KNPDYVRKGD TRLPLKWMAP 180
  181 ESIFDKIYST KSDVWSYGVL LWEIFSLGGS PYPGVQMDED FCSRLREGMR MRAPEYSTPE 240
  241 IYQIMLDCWH RDPKERPRFA ELVEKLGDLL QANVQQDGKD YIPINAILTG NSGFTYSTPA 300
  301 FSEDFFKESI SAPKFNSGSS DDVRYVNAFK FMSLERIKTF EELLPNATSM FDDYQGDSST 360
  361 LLASPMLKRF TWTDSKPKAS LKIDLRVTSK SKESGLSDVS RPSFCHSSCG HVSEGKRRFT 420
  421 YDHAELERKI ACCSPPPDYN SVVLYSTPPI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.69897
Match: 1koaA
Description: TWITCHIN KINASE FRAGMENT (C.ELEGANS), AUTOREGULATED PROTEIN KINASE AND IMMUNOGLOBULIN DOMAINS
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle