YRC Public Data Repository - Protein Structure Prediction

Protein:	LHFPL5
Organism:	Homo sapiens
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHFPL5.

Description	E-value	Query Range	Subject Range
gi\|76650028 - gi\|76650028\|ref\|XP_606243.2\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Bos taurus]	2.0E-84	[1..217]	[1..217]
gi\|73972668 - gi\|73972668\|ref\|XP_538882.2\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Canis familia...	1.0E-82	[1..216]	[1..216]
TMHS_CHICK - Tetraspan membrane protein of hair cell stereocilia homolog OS=Gallus gallus GN=LHFPL5 PE=2 SV=1	2.0E-80	[1..218]	[1..218]
gi\|114615290 - gi\|114615290\|ref\|XP_527854.2\| PREDICTED: similar to Lipoma HMGIC fusion partner-like 3 protein [Pan ...	3.0E-80	[4..218]	[13..227]
gi\|109472966, gi... - gi\|109472966\|ref\|XP_001062080.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 3 [Rattus no...	3.0E-80	[4..218]	[12..226]
gi\|124486999, gi... - gi\|94374333\|ref\|XP_485569.4\| PREDICTED: lipoma HMGIC fusion partner-like 3 isoform 1 [Mus musculus],...	4.0E-80	[4..218]	[1..215]
gi\|109070878 - gi\|109070878\|ref\|XP_001112357.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Macaca mu...	3.0E-79	[1..216]	[1..216]
gi\|51095164, gi\|... - gi\|51095164\|gb\|EAL24407.1\| lipoma HMGIC fusion partner-like 3 [Homo sapiens], gi\|39752685\|ref\|NP_945...	4.0E-79	[4..216]	[15..227]

Back

Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLLPAQEA AKIYHTNYVR NSRAVGVMWG TLTICFSVLV MALFIQPYWI GDSVNTPQAG  60
   61 YFGLFSYCVG NVLSSELICK GGPLDFSSIP SRAFKTAMFF VALGMFLIIG SIICFSLFFI 120
  121 CNTATVYKIC AWMQLAAATG LMIGCLVYPD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWDSSEVRRM CGEQTGKYTL GHCTIRWAFM LAILSIGDAL ILSFLAFVLG YRQDKLLPDD  60
   61 YKADGTEEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits