YRC Public Data Repository - Protein Structure Prediction

Protein:	SCG5
Organism:	Homo sapiens
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCG5.

Description	E-value	Query Range	Subject Range
gi\|109080479 - gi\|109080479\|ref\|XP_001083853.1\| PREDICTED: secretogranin V (7B2 protein) isoform 3 [Macaca mulatta]	0.0	[1..212]	[1..212]
gi\|67970826 - gi\|67970826\|dbj\|BAE01755.1\| unnamed protein product [Macaca fascicularis]	0.0	[1..212]	[1..212]
gi\|13529158 - gi\|13529158\|gb\|AAH05349.1\| Secretogranin V (7B2 protein) [Homo sapiens]	0.0	[1..212]	[1..212]
gi\|60826870 - gi\|60826870\|gb\|AAX36775.1\| secretory granule neuroendocrine protein 1 [synthetic construct]	0.0	[1..212]	[1..211]
gi\|88682959, gi\|... - gi\|88682959\|gb\|AAI05454.1\| Secretogranin V (7B2 protein) [Bos taurus], gi\|114051029\|ref\|NP_001039463...	0.0	[1..212]	[1..211]
gi\|26327675 - gi\|26327675\|dbj\|BAC27581.1\| unnamed protein product [Mus musculus]	0.0	[1..212]	[1..212]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRMVSTML SGLLFWLASG WTPAFAYSPR TPDRVSEADI QRLLHGVMEQ LGIARPRVEY  60
   61 PAHQAMNLVG PQSIEGGAHE GLQHLGPFGN IPNIVAELTG DNIPKDFSED QGYPDPPNPC 120
  121 PVGKTADDGC LENTPDTAEF SREFQLHQHL FDPEHDYPGL GKWNKKLLYE KMKGGERRKR 180
  181 RSVNPYLQGQ RLDNVVAKKS VPHFSDEDKD PE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits