| Protein: | GPC6 |
| Organism: | Homo sapiens |
| Length: | 555 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPC6.
| Description | E-value | Query Range |
Subject Range |
|
|
879.0 | [0..1] | [555..1] |
|
|
867.0 | [0..1] | [555..1] |
|
|
849.0 | [0..1] | [555..1] |
|
|
802.0 | [0..9] | [555..9] |
|
|
793.0 | [0..9] | [555..9] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MPSWIGAVIL PLLGLLLSLP AGADVKARSC GEVRQAYGAK GFSLADIPYQ EIAGEHLRIC 60
61 PQEYTCCTTE MEDKLSQQSK LEFENLVEET SHFVRTTFVS RHKKFD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.705 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.434 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.427 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.386 | N/A | N/A | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
|
Region A: Residues: [107-237] |
1 11 21 31 41 51
| | | | | |
1 EFFRELLENA EKSLNDMFVR TYGMLYMQNS EVFQDLFTEL KRYYTGGNVN LEEMLNDFWA 60
61 RLLERMFQLI NPQYHFSEDY LECVSKYTDQ LKPFGDVPRK LKIQVTRAFI AARTFVQGLT 120
121 VGREVANRVS K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.962 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.928 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.928 | N/A | N/A | a.118.22 | Description not found. |
| View | Download | 0.854 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.850 | N/A | N/A | a.29.16 | Description not found. |
| View | Download | 0.826 | N/A | N/A | a.29.16 | Description not found. |
| View | Download | 0.797 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.743 | N/A | N/A | a.118.8 | TPR-like |
|
Region A: Residues: [238-306] |
1 11 21 31 41 51
| | | | | |
1 VSPTPGCIRA LMKMLYCPYC RGLPTVRPCN NYCLNVMKGC LANQADLDTE WNLFIDAMLL 60
61 VAERLEGPF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.920 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.920 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.784 | N/A | N/A | a.272.1 | Description not found. |
| View | Download | 0.754 | N/A | N/A | a.7.14 | Description not found. |
| View | Download | 0.733 | N/A | N/A | a.24.20 | Description not found. |
| View | Download | 0.704 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.662 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.658 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.645 | N/A | N/A | a.60.1 | SAM/Pointed domain |
|
Region A: Residues: [307-377] |
1 11 21 31 41 51
| | | | | |
1 NIESVMDPID VKISEAIMNM QENSMQVSAK VFQGCGQPKP APALRSARSA PENFNTRFRP 60
61 YNPEERPTTA A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.483 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.447 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.381 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.381 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.377 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.377 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.360 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.360 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.352 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.342 | N/A | N/A | a.64.1 | Saposin |
|
Region A: Residues: [378-555] |
1 11 21 31 41 51
| | | | | |
1 GTSLDRLVTD IKEKLKLSKK VWSALPYTIC KDESVTAGTS NEEECWNGHS KARYLPEIMN 60
61 DGLTNQINNP EVDVDITRPD TFIRQQIMAL RVMTNKLKNA YNGNDVNFQD TSDESSGSGS 120
121 GSGCMDDVCP TEFEFVTTEA PAVDPDRREV DSSAAQRGHS LLSWSLTCIV LALQRLCR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.471 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.471 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.272 | N/A | N/A | a.213.1 | Description not found. |
| View | Download | 0.254 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.250 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.212 | N/A | N/A | a.24.19 | Description not found. |
