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View Structure Prediction Details

Protein: CDS2
Organism: Homo sapiens
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS2.

Description E-value Query
Range
Subject
Range
gi|114680827 - gi|114680827|ref|XP_001165937.1| PREDICTED: phosphatidate cytidylyltransferase 2 isoform 5 [Pan trog...
0.0 [1..445] [1..445]
gi|47125068 - gi|47125068|gb|AAH69879.1| Cds2 protein [Mus musculus]
0.0 [1..445] [1..444]
CDS2_RAT - Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus GN=Cds2 PE=1 SV=1
0.0 [1..445] [1..443]
gi|50759504 - gi|50759504|ref|XP_417669.1| PREDICTED: similar to CDP-diacylglycerol synthase (phosphatidate cytidy...
0.0 [1..443] [1..447]
gi|73991700 - gi|73991700|ref|XP_542903.2| PREDICTED: similar to phosphatidate cytidylyltransferase 2 [Canis famil...
0.0 [20..445] [29..454]
gi|3892191 - gi|3892191|gb|AAC78305.1| CDP-diacylglycerol synthase 2 [Homo sapiens]
0.0 [25..445] [1..421]
gi|122890796, gi... - gi|68359998|ref|XP_702473.1| PREDICTED: hypothetical protein XP_697381 [Danio rerio], gi|122890796|e...
0.0 [1..443] [1..442]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELRQRVAH EPVAPPEDKE SESEAKVDGE TASDSESRAE SAPLPVSADD TPEVLNRALS  60
   61 NLSSRWKNWW VRGILTLAMI A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFFIIIYLGP MVLMIIVMCV QIKCFHEIIT IGYNVYHSYD LPWFRTLSWY FLLCVNYFFY  60
   61 GETVTDYFFT LVQREEPLRI LSKYHRFISF TLYLIGFCMF VLSLVKKHYR LQFYMFGWTH 120
  121 VTLLIVVTQS HLVIHNLFEG MIWFIVPISC VICNDIMAYM FGFFFGRTPL IKLSPKKTWE 180
  181 GFIGGFFATV VFGLLLSYVM SGYRC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVCPVEYNND TNSFTVDCEP SDLFRLQEYN IPGVIQSVIG WKTVRMYPFQ IHSIALSTFA  60
   61 SLIGPFGGFF ASGFKRAFKI KDFANTIPGH GGIMDRFDCQ YLMATFVNVY IASFIRGPNP 120
  121 SKLIQQFLTL RPDQQLHIFN TLRSHLIDKG MLTSTTEDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle