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View Structure Prediction Details

Protein: MYF6
Organism: Homo sapiens
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYF6.

Description E-value Query
Range
Subject
Range
gi|33355711 - gi|33355711|gb|AAQ16205.1| eukaryotic myogenic factor MYF-6 [Sus scrofa]
9.0E-60 [1..242] [1..242]
MYF6_BOVIN - Myogenic factor 6 OS=Bos taurus GN=MYF6 PE=2 SV=1
2.0E-58 [1..242] [1..242]
MYF6_MOUSE - Myogenic factor 6 OS=Mus musculus GN=Myf6 PE=2 SV=1
2.0E-57 [1..242] [1..242]
gi|60821738 - gi|60821738|gb|AAX36585.1| myogenic factor 6 [synthetic construct]
gi|49456485 - gi|49456485|emb|CAG46563.1| MYF6 [Homo sapiens]
6.0E-57 [1..242] [1..242]
MYF6_RAT - Myogenic factor 6 OS=Rattus norvegicus GN=Myf6 PE=2 SV=1
1.0E-56 [1..242] [1..242]
MYF6_CHICK - Myogenic factor 6 OS=Gallus gallus GN=MYF6 PE=2 SV=1
1.0E-49 [1..242] [1..242]
gi|45510885 - gi|45510885|gb|AAS67040.1| myogenin [Ameiurus catus]
4.0E-46 [3..233] [1..244]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMDLFETGS YFFYLDGENV TLQPLEVAEG SPLYPGSDGT LSPCQDQMPP EAGSDSSGEE  60
   61 HVLAPPGLQP PHCPGQCLIW ACKTCKR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.040959
Match: PF01586.7
Description: No description for PF01586.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSAPTDRRKA ATLRERRRLK KINEAFEALK RRTVANPNQR LPKVEILRSA ISYIERLQDL  60
   61 LHRLDQQEKM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1mdyA
Description: Myod B/HLH domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 5.38658950816179 bayes_pls_golite062009
DNA binding 5.18654839258297 bayes_pls_golite062009
nucleic acid binding 5.05768805749761 bayes_pls_golite062009
transcription factor activity 4.78039531631248 bayes_pls_golite062009
transcription activator activity 3.87875547821718 bayes_pls_golite062009
binding 3.81829206350975 bayes_pls_golite062009
sequence-specific DNA binding 3.42035985454056 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.39500382187264 bayes_pls_golite062009
protein binding 2.64975291677725 bayes_pls_golite062009
transcription factor binding 2.61163564741984 bayes_pls_golite062009
transcription repressor activity 2.58751248599889 bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding 2.42306484786159 bayes_pls_golite062009
transcription corepressor activity 2.03674713048499 bayes_pls_golite062009
transcription cofactor activity 1.52770895937238 bayes_pls_golite062009
promoter binding 0.8576109846276 bayes_pls_golite062009
protein heterodimerization activity 0.53175615551166 bayes_pls_golite062009
transcription coactivator activity 0.3513586903977 bayes_pls_golite062009
protein dimerization activity 0.20674648626116 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [158-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QELGVDPFSY RPKQENLEGA DFLRTCSSQW PSVSDHSRGL VITAKEGGAS IDSSASSSLR  60
   61 CLSSIVDSIS SEERKLPCVE EVVEK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle