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View Structure Prediction Details

Protein: gi|219520100, gi...
Organism: Homo sapiens
Length: 644 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|219520100, gi....

Description E-value Query
Range
Subject
Range
gi|114623876, gi... - gi|55633235|ref|XP_528551.1| PREDICTED: similar to cone sodium-calcium potassium exchanger splice va...
0.0 [1..644] [1..644]
gi|109111430 - gi|109111430|ref|XP_001108699.1| PREDICTED: solute carrier family 24 (sodium/potassium/calcium excha...
0.0 [1..644] [1..644]
SLC24A2 - solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
0.0 [1..644] [1..661]
gi|109730377 - gi|109730377|gb|AAI16638.1| Slc24a2 protein [Mus musculus]
0.0 [1..644] [1..649]
gi|73971046 - gi|73971046|ref|XP_864952.1| PREDICTED: similar to Sodium/potassium/calcium exchanger 2 precursor (N...
0.0 [1..644] [1..644]
NCKX2_RAT - Sodium/potassium/calcium exchanger 2 OS=Rattus norvegicus GN=Slc24a2 PE=1 SV=1
0.0 [1..644] [1..670]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQQSTTIT SLEKWCLDES LSGCRRHYSV KKKLKLIRVL GLFMGLVAIS TVSFSISAFS  60
   61 ETDTQSTGEA SVVSGPRVAQ GYHQRTLLDL NDKILDYTPQ PPLSKEGESE NSTDHAQGDY 120
  121 PKDIFSLEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [130-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRKGAIILHV IGMIYMFIAL AIVCDEFFVP SLTVITEKLG ISDDVAGATF MAAGGSAPEL  60
   61 FTSLIGVFIA HSNVGIGTIV GSAVFNILFV IGMCALFSRE ILNLTWWPLF RDVSFYIVDL 120
  121 IMLIIFFLDN VIMWWESLLL LTAYFCYVVF MKFNVQVEKW VKQM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.79588
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [294-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INRNKVVKVT APEAQAKPSA ARDKDEPTLP AKPRLQRGGS SASLHNSLMR NSIFQLMIHT  60
   61 LDPLAEGRFR EKASILHKIA KKKCHVDENE RQNGAANHVE KIELPNSTST DVEMTPSSDA 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [415-644]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPVQNGNLSH NIEGAEAQTA DEEEDQPLSL AWPSETRKQV TFLIVFPIVF PLWITLPDVR  60
   61 KPSSRKFFPI TFFGSITWIA VFSYLMVWWA HQVGETIGIS EEIMGLTILA AGTSIPDLIT 120
  121 SVIVARKGLG DMAVSSSVGS NIFDITVGLP LPWLLYTVIH RFQPVAVSSN GLFCAIVLLF 180
  181 IMLLFVILSI ALCKWRMNKI LGFIMFGLYF VFLVVSVLLE DRILTCPVSI 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.148742
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle