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View Structure Prediction Details

Protein: lir-1
Organism: Caenorhabditis elegans
Length: 249 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lir-1.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
342.0 [0..4] [245..2540]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQLNDEER QRLMKMISTP GPQTLSMERI QMAPGQGQHI LQQHQIPSTS SYTNNSFIYI  60
   61 KSDPQYKDEP QQQSNQFDAT VNSVAHGQAG LSTLEMFACN GSPNGGDVLR RKTPSRKAED 120
  121 SIKATCKVCG HDVMYSPQRT WNLMRHVWIM HQSSKPNQCS ICGYSHIKPY VRKHIESQHK 180
  181 HDSNATIIDL KSPELEAEWS QLLDQCFGVT YRKWKHHKED TQHTVFAAGD EDYGHEHHFS 240
  241 PEEDVMTTL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle