YRC Public Data Repository - Protein Structure Prediction

Protein:	PDE6H
Organism:	Homo sapiens
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDE6H.

Description	E-value	Query Range	Subject Range
CCDS8672.1_1 - null gi\|109095798 - gi\|109095798\|ref\|XP_001091111.1\| PREDICTED: phosphodiesterase 6H, cGMP-specific, cone, gamma [Macaca...	159.0	[0..1]	[83..1]
gi\|114643795 - gi\|114643795\|ref\|XP_001158553.1\| PREDICTED: phosphodiesterase 6H, cGMP-specific, cone, gamma [Pan tr...	158.0	[0..1]	[83..1]
gi\|73997599 - gi\|73997599\|ref\|XP_853743.1\| PREDICTED: similar to Retinal cone rhodopsin-sensitive cGMP 3,5-cyclic ...	158.0	[0..1]	[83..1]
gi\|28628607 - gi\|28628607\|gb\|AAO49274.1\|AF480878_1 cone phosphodiesterase beta subunit [Tamias striatus]	158.0	[0..1]	[83..1]
CNCG_BOVIN - Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma OS=Bos taurus GN=...	157.0	[0..1]	[83..1]
CNCG_MOUSE - Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma OS=Mus musculus G... CNCG_RAT - Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma OS=Rattus norvegi...	154.0	[0..1]	[83..1]
gi\|68357320 - gi\|68357320\|ref\|XP_692194.1\| PREDICTED: similar to Phosphodiesterase 6G, cGMP-specific, rod, gamma [...	147.0	[0..14]	[83..279]
gi\|29293683, gi\|... - gi\|45383346\|ref\|NP_989739.1\| phosphodiesterase 6H [Gallus gallus], gi\|29293683\|gb\|AAO67734.1\| phosph...	146.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNTTLPAP ASNQGPTTPR KGPPKFKQRQ TRQFKSKPPK KGVKGFGDDI PGMEGLGTDI  60
   61 TVICPWEAFS HLELHELAQF GII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	2ju4A
Description:	No description for 2ju4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits