| Protein: | NSFL1C |
| Organism: | Homo sapiens |
| Length: | 370 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSFL1C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..370] | [1..370] |
|
|
0.0 | [1..370] | [1..370] |
|
|
0.0 | [1..370] | [1..370] |
|
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0.0 | [1..370] | [1..370] |
|
|
0.0 | [1..370] | [1..370] |
|
|
0.0 | [1..370] | [1..372] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MAAERQEALR EFVAVTGAEE DRARFFLESA GWDLQIALAS FYEDGGDEDI VTISQATPSS 60
61 VSRGTAPS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.757 | 0.063 | nucleus | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.672 | 0.001 | Golgi apparatus | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.725 | N/A | N/A | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.673 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.663 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
|
Region A: Residues: [69-160] |
1 11 21 31 41 51
| | | | | |
1 DNRVTSFRDL IHDQDEDEEE EEGQRFYAGG SERSGQQIVG PPRKKSPNEL VDDLFKGAKE 60
61 HGAVAVERVT KSPGETSKPR PFAGGGYRLG AA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.371 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.278 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.264 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.257 | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
| View | Download | 0.262 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
|
Region A: Residues: [161-271] |
1 11 21 31 41 51
| | | | | |
1 PEEESAYVAG EKRQHSSQDV HVVLKLWKSG FSLDNGELRS YQDPSNAQFL ESIRRGEVPA 60
61 ELRRLAHGGQ VNLDMEDHRD EDFVKPKGAF KAFTGEGQKL GSTAPQVLST S
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1ss6A |
| Description: | Solution structure of SEP domain from human p47 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [272-370] |
1 11 21 31 41 51
| | | | | |
1 SPAQQAENEA KASSSILIDE SEPTTNIQIR LADGGRLVQK FNHSHRISDI RLFIVDARPA 60
61 MAATSFILMT TFPNKELADE SQTLKEANLL NAVIVQRLT
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1s3sG |
| Description: | Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.73741203922834 | bayes_pls_golite062009 |
| protein binding | 1.6357717410164 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.16524840930815 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.544811416739 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.288560953468985 | bayes_pls_golite062009 |
| hydrolase activity | 0.0740461973842489 | bayes_pls_golite062009 |
