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View Structure Prediction Details

Protein: NPRL3_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 585 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPRL3_SCHPO.

Description E-value Query
Range
Subject
Range
gi|26338628 - gi|26338628|dbj|BAC32985.1| unnamed protein product [Mus musculus]
719.0 [0..9] [584..8]
gi|17104479 - gi|17104479|gb|AAL35401.1| CGTHBA [Gallus gallus]
703.0 [0..9] [584..8]
gi|68438843 - gi|68438843|ref|XP_686019.1| PREDICTED: similar to alpha globin regulatory element containing gene [...
699.0 [0..9] [584..34]
gi|37747682, gi|... - gi|37747682|gb|AAH59973.1| MGC68624 protein [Xenopus laevis], gi|147900207|ref|NP_001083270.1| hypot...
697.0 [0..9] [584..8]
gi|114660090, gi... - gi|114660092|ref|XP_001151220.1| PREDICTED: similar to -14 isoform 8 [Pan troglodytes], gi|114660090...
694.0 [0..9] [584..8]
NPRL3 - nitrogen permease regulator-like 3 (S. cerevisiae)
693.0 [0..9] [584..8]

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Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLTPRLVA IFLVEKTTSG ANFVFHWPLQ PQVRLQATHH NNDSAESAIG MLDL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.598 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.541 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.506 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.469 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.375 N/A N/A d.15.7 Immunoglobulin-binding domains

Predicted Domain #2
Region A:
Residues: [55-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDSDDDENNR FTEVADDTHV LGYEKGFLAN MLSPRIELCN QKFEIWVDGL TFLGCPVHIG  60
   61 PNGEWAKRRK PRTTVESNAS SSHLVSKPES SHPSTGSFEV KSSSSKSRSS MSLFHVVFVL 120
  121 NVPTATVYRP TVNTMYDHIV VKLVTGLKYE QAKRNYVENE CIHILKLTEK YSSQNV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [231-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFDVYAAQIP HHSNLASVLA TTYEALINMH TAYLEINQSI NLSLLWPMSV STNTLENYEL  60
   61 QVRPSTILAS QTIFSEEHPS SIEPFVAPYW TLLLLKDTDT IMKRVPLLQN SLLSSFIAIV 120
  121 KPNLTFTDIA NRLGISVSEC FILAKHLIHW RKAIAIPPLL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [391-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRNTYVTSPT ANLFNLEEES KLFKKEFPSL PSLSTFLAIL SFKPRPFASI IPSKDHELVY  60
   61 LEMLAWLCRR NWVY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [465-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQNIYMYILV PEEIKKKAIA LIESDESSKN DMQLRKQLEQ DNGKESIIID PHSASLLEQK  60
   61 WIQIIAYERG PEMAPLFTSI VKYLNGRFAL QTIWVAEGLP RKLMRNILNE YNDYILRWHS 120
  121 W

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle