YRC Public Data Repository - Protein Structure Prediction

Protein:	GOLPH3
Organism:	Homo sapiens
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GOLPH3.

Description	E-value	Query Range	Subject Range
GOLP3_MOUSE - Golgi phosphoprotein 3 OS=Mus musculus GN=Golph3 PE=1 SV=1 gi\|149027294, gi... - gi\|62461580\|ref\|NP_076467.2\| golgi phosphoprotein 3 (coat-protein) [Rattus norvegicus], gi\|62205048\|...	0.0	[1..298]	[1..298]
GOLP3_RAT - Golgi phosphoprotein 3 OS=Rattus norvegicus GN=Golph3 PE=1 SV=1	0.0	[1..298]	[1..298]
gi\|220944844, gi... - gi\|220954760\|gb\|ACL89923.1\| l(2)s5379-PA [synthetic construct], gi\|220944844\|gb\|ACL84965.1\| l(2)s537... l(2)s5379-PA, l(... - The gene lethal (2) s5379 is referred to in FlyBase by the symbol Dmel\l(2)s5379 (CG7085, FBgn001070...	0.0	[6..298]	[2..294]
gi\|197246951, gi... - gi\|63100626\|gb\|AAH95205.1\| Golph3 protein [Danio rerio], gi\|197246951\|gb\|AAI64056.1\| Golph3 protein ...	0.0	[1..298]	[1..295]
gi\|114559330, gi... - gi\|114559330\|ref\|XP_001169746.1\| PREDICTED: GPP34-related protein isoform 4 [Pan troglodytes], gi\|11... GOLPH3L - golgi phosphoprotein 3-like	0.0	[1..298]	[1..284]
gi\|109016095, gi... - gi\|109016095\|ref\|XP_001102928.1\| PREDICTED: similar to GPP34-related protein isoform 3 [Macaca mulat... CCDS966.1_1 - null gi\|90078452 - gi\|90078452\|dbj\|BAE88906.1\| unnamed protein product [Macaca fascicularis]	0.0	[1..298]	[1..284]
gi\|31197197, gi\|... - gi\|31197197\|ref\|XP_307546.1\| Anopheles gambiae str. PEST AGAP012632-PA [Anopheles gambiae str. PEST]... AGAP012632-PA, A... - golgi phosphoprotein 3\|protein_coding\|UNKN:19369809:19371967:-1\|gene:AGAP012606, Golgi phosphoprotei...	0.0	[6..298]	[2..291]
GLP3L_BOVIN - Golgi phosphoprotein 3-like OS=Bos taurus GN=GOLPH3L PE=2 SV=1	0.0	[1..298]	[1..284]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLTQRSSG LVQRRTEASR NAADKERAAG GGAGSSEDDA QSRRDEQDDD DKGDSKETRL  60
   61 TLMEEVLLLG LKDREGYTSF WNDCISSGLR GCMLIELALR GRLQLEACGM RRKSLLTRKV 120
  121 ICKSDAPTGD VLLDEALKHV KETQPPETVQ NWIELLSGET WNPLKLHYQL RNVRERLAKN 180
  181 LVEKGVLTTE KQNFLLFDMT THPLTNNNIK QRLIKKVQEA VLDKW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNDPHRMDRR LLALIYLAHA SDVLENAFAP LLDEQYDLAT KRVRQLLDLD PEVECLKANT  60
   61 NEVLWAVVAA FTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.935	N/A	N/A	a.112.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits