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View Structure Prediction Details

Protein: gi|113564163, gi...
Organism: Oryza sativa Japonica Group
Length: 468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113564163, gi....

Description E-value Query
Range
Subject
Range
gi|19033168, gi|... - gi|19033168|gb|AAL83562.1|AF468689_1 violaxanthin de-epoxidase [Oryza sativa (japonica cultivar-grou...
779.0 [0..45] [468..23]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPRQCGNRA LLAEGSSTVV VVHGRKTRGG ISTVTSSRRR SHGGVRYHRC CPPRAHLWRK  60
   61 GDHLPLHHAK ISARCSEIKA HTVLQGSDAL SSIREWSRSH LVTMTGLVAC AVLVVPSADA 120
  121 VDALKTCTCL LKECR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IELAKCIANP SCAANVACLN TCNNRPDETE CQIKCGDLFE NTVVDEFNEC AVSRKKCVPQ  60
   61 KSDVGEFPVP DPSALVKNFN MADFNGKWYI SSGLNPTFDT FDCQLHEFRV EGDKLIANLT 120
  121 WRIRTPDSGF FTRTAIQRFV QDPAQPAILY NHDNEFLHYQ DDWYIISSKV ENKEDDYIFV 180
  181 YYRGRNDAWD GYGGAVLYTR SKVVPESIVP ELERAAKSVG RDFSTFIRTD NTCG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.32
Match: 2hzqA
Description: No description for 2hzqA was found.

Predicted Domain #3
Region A:
Residues: [370-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPPLVERIE KTVEQGEKTI IREVQEIEGE IEGEVKELEE EEVTLFKRLT DGLMEVKQDL  60
   61 MNFFQGLSKE EMELLDQMNM EATEVEKVFS RALPIRKLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle