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View Structure Prediction Details

Protein: gi|215767104, gi...
Organism: Oryza sativa Japonica Group
Length: 926 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|215767104, gi....

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLRGGGG SKRGMPAAPT VTPKAVIHQK YGAKACYSVE EVREAVDGGC PGLALPQQTR  60
   61 SVYRCSLDIP GLTVVTPGTF VRKKDAEQAA AQIALDKLGI QPTANAPSTP EEAWDELIAR 120
  121 ISGFFTDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFPSSSHPLI GHMCVTFRRT GDRFGMIPMS AIAACDVKVI GLCKLIDPKA EFDPLLVLSL  60
   61 IYNAAKKSPG VSVSDSNFWI WSQKPYSPEA VDLALQHWSG ITDPIEVDGI FVPCMMEDEP 120
  121 KTIRLTLSHN EHYMGDIVSK LSASDSSHAV VSRTVGKASS EIRLYFSAPN VQFVSEISHN 180
  181 VVSSLGDGYM ESLINKRASF ISGQTIYGDA ILANV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYTRRDSELH TEDVTLSNYY RILLGKSPDG NYKISRDSIL VAELPSVYSR SSWKGLSPRD  60
   61 LLCSFCRLHR LAEPYFAVNR CASDGKNDKE NPDMFKCDVK IYSKKQELLL EYSTADTWSK 120
  121 ESDAIHNSSL KVLIWFCSYF KQPNKHVLKL SHSKSTDGFT ICPDNFLHEF AMFLSIYGNR 180
  181 GGDDSSACST VG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [536-846]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSMDTSKQK LENNAVLAHI DGPDSGVFPS HGSLTCISYT ASLVVKDKTN RYTLESNNEF  60
   61 EFEIGTGAVK NQIESCVSQL SVNQSACFIA ELPPKDLILA AANEFSHDLS KISRDNCFLE 120
  121 FSVKVLQVTE PLEDRMEKAL FNPPLSKQRV EFAVRYINEL HATTLVDFGC GSGSLLDSLL 180
  181 EHPTTLEKVV GVDISRKGLT RAAKSLHQKL SKKSLMQTSV PTAVLYDGSI TDFDSRLYRF 240
  241 DIGTCLEVIE HVEEDQASLC GDVVLSSFCP TVLIVSTPNY EYNPILQRSA MPNKEEEPEE 300
  301 NAGPCKFRNH D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1qzzA
Description: Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [847-926]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKFEWTRSQF QHWATGLAEK HNYSVEFSGV GGSGDEPGFA SQIAVFRRMA SGQDEVCQEG  60
   61 ELHQPYELLW EWPNASLPSH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.30103
Match: 1tpyA
Description: Structure of the cyclopropane synthase MmaA2 from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle