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View Structure Prediction Details

Protein: gi|113612039, gi...
Organism: Oryza sativa Japonica Group
Length: 730 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113612039, gi....

Description E-value Query
Range
Subject
Range
gi|50510128, gi|... - gi|50510128|dbj|BAD31094.1| hypothetical protein [Oryza sativa Japonica Group], gi|34899018|ref|NP_9...
966.0 [0..1] [730..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRCRVAY VVLAALAAAP FLLLLLYGGG SPSALCLAAA RSGGASRRLQ YPSVAWSRVP  60
   61 PLPVLPSSPL PSLRASRWII FAAAAHHPRH RPLPAVPGWQ LLAVADETTP PDWSHPGAAL 120
  121 LTLADQARLG FRSVAFLPAR GHARKAAAYL FAVQRGARVI YDADARNAVL GSNLTKHFDV 180
  181 DLDHRQGGGV LLQYSHADPN RTVVNPYVH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGQPSVWPRG LPLHKAGEVG VEEFYTQVFG GGQFIQQGLC NGLPDVDAVF YFTRKSSEME  60
   61 AFDLRFDADA PKVALPQGMM APINSVNTLF HSPAFWGLAL PVSVSPMAAD VIRGYWSQRI 120
  121 LWEIGGYLVV YPPTVHRMDN VHAHPFDDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [359-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDIHVSVGRL IDFLMEWRSH KQTLFERILD LSYAMTEEGF WGEKDLQFMS AWLQDLVSVG  60
   61 YRQPRLMSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [428-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIDRPRATIG HGDKQVFVPK KLPTVHLGVE EIGEVSTEIG NLIKWRKHFG DVVLIVHCTV  60
   61 PVDRVALEWR LLYGRIFRAV VILSEKSNSD LAVEVSNLAQ AYKFLPKVFD RFAGAGGFMF 120
  121 LQDHMILNYW NLYDFDKAKL WITNKVKESW SDVPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [583-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGNKIEWFIN QGDMVKKAIA SFPFQYQANY KRSVGEDKII HCNSEIFYIP RSHIGDFSYL  60
   61 VQAIGSLDIH HSIAIPMLFL AMDLPSNFES KALTKLIYRT NVQSNATFAT IYTAQAHAVY 120
  121 PMKVQNEIDF VELIRVMASG DPFLMELI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle