YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGF
Organism:	Homo sapiens
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGF.

Description	E-value	Query Range	Subject Range
gi\|114577255, gi... - gi\|114577257\|ref\|XP_001148023.1\| PREDICTED: phosphatidylinositol glycan, class F isoform 3 [Pan trog...	3.0E-81	[1..219]	[1..219]
gi\|109102846 - gi\|109102846\|ref\|XP_001113130.1\| PREDICTED: similar to phosphatidylinositol glycan, class F isoform ...	2.0E-80	[1..219]	[1..219]
gi\|74222740, gi\|... - gi\|74222740\|dbj\|BAE42236.1\| unnamed protein product [Mus musculus], gi\|22135636\|gb\|AAH28862.1\| Phosp...	7.0E-80	[1..219]	[1..219]
gi\|73969534 - gi\|73969534\|ref\|XP_531809.2\| PREDICTED: similar to phosphatidylinositol glycan, class F isoform 1 is...	5.0E-78	[1..219]	[1..219]
gi\|45387713, gi\|... - gi\|45387713\|ref\|NP_991208.1\| phosphatidylinositol glycan anchor biosynthesis, class F [Danio rerio],...	3.0E-73	[1..217]	[1..217]
gi\|116004365, gi... - gi\|83405738\|gb\|AAI11282.1\| Phosphatidylinositol glycan anchor biosynthesis, class F [Bos taurus], gi...	5.0E-73	[1..219]	[1..219]
gi\|27894291, gi\|... - gi\|27894291\|ref\|NP_775097.1\| phosphatidylinositol glycan anchor biosynthesis, class F isoform 2 [Hom...	2.0E-66	[1..182]	[1..182]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNDIKRLL YTHLLCIFSI ILSVFIPSLF LENFSILETH LTWLCICSGF VTAVNLVLYL  60
   61 VV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPNTSSKRSS LSHKVTGFLK CCIYFLMSCF SFHVIFVLYG APLIELALET FLFAVILSTF  60
   61 TTVPCLCLLG PNLKAWLRVF SRNGVTSIWE NSLQITTISS FVGAWLGALP IPLDWERPWQ 120
  121 VWPISCTLGA TFGYVAGLVI SPLWIYWNRK QLTYKNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits