| Protein: | LGTN |
| Organism: | Homo sapiens |
| Length: | 584 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGTN.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..584] | [100..683] |
|
|
0.0 | [1..584] | [1..584] |
|
|
0.0 | [1..584] | [1..584] |
|
|
0.0 | [1..584] | [1..584] |
|
|
0.0 | [1..583] | [1..570] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MFAKAFRVKS NTAIKGSDRR KLRADVTTAF PTLGTDQVSE LVPGKEELNI VKLYAHKGDA 60
61 VTVYVSGGNP ILFELEKNLY PTVYTLWSYP DLLPTFTTWP LVLEKLVGGA DLMLPGLVMP 120
121 PAGLPQVQKG DLCAISLVGN RAPVAIGVAA MSTAEMLTSG LKGRGFSVLH TYQDHLWRSG 180
181
|
| Detection Method: |  |
| Confidence: | 40.39794 |
| Match: | 2ausC |
| Description: | No description for 2ausC was found. |
|
Region A: Residues: [181-248] |
1 11 21 31 41 51
| | | | | |
1 NKSSPPSIAP LALDSADLSE EKGSVQMDST LQGDMRHMTL EGEEENGEVH QAREDKSLSE 60
61 APEDTSTR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [249-358] |
1 11 21 31 41 51
| | | | | |
1 GLNQDSTDSK TLQEQMDELL QQCFLHALKC RVKKADLPLL TSTFLGSHMF SCCPEGRQLD 60
61 IKKSSYKKLS KFLQQMQQEQ IIQVKELSKG VESIVAVDWK HPRITSFVIP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.258 | c.47.1 | Thioredoxin-like |
| View | Download | 0.236 | d.52.7 | Ribosome-binding factor A, RbfA |
|
Region A: Residues: [359-468] |
1 11 21 31 41 51
| | | | | |
1 EPSPTSQTIQ EGSREQPYHP PDIKPLYCVP ASMTLLFQES GHKKGSFLEG SEVRTIVINY 60
61 AKKNDLVDAD NKNLVRLDPI LCDCILEKNE QHTVMKLPWD SLLTRCLEKL
|
| Detection Method: | |
| Confidence: | 1.32 |
| Match: | 1v32A |
| Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 4.72233209840291 | bayes_pls_golite062009 |
| protein binding | 2.52181725362933 | bayes_pls_golite062009 |
| binding | 2.18328191469694 | bayes_pls_golite062009 |
| transcription regulator activity | 1.77240364924631 | bayes_pls_golite062009 |
| transcription activator activity | 0.995535823852062 | bayes_pls_golite062009 |
| transcription repressor activity | 0.464336112087611 | bayes_pls_golite062009 |
| basal transcription repressor activity | 0.307849920263354 | bayes_pls_golite062009 |
| transcription factor binding | 0.203735997461782 | bayes_pls_golite062009 |
| catalytic activity | 0.151165614150825 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.125030292437611 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.012901717642134 | bayes_pls_golite062009 |
|
Region A: Residues: [469-584] |
1 11 21 31 41 51
| | | | | |
1 QPAYQVTLPG QEPIVKKGRI CPIDITLAQR ASNKKVTVVR NLEAYGLDPY SVAAILQQRC 60
61 QASTTVNPAP GAKDSLQVQI QGNQVHHLGW LLLEEYQLPR KHIQGLEKAL KPGKKK
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 2if1A |
| Description: | HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 6.56930940751046 | bayes_pls_golite062009 |
| translation regulator activity | 2.27579767245564 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 2.25914933413253 | bayes_pls_golite062009 |
| binding | 1.99916637558859 | bayes_pls_golite062009 |
| nucleic acid binding | 1.69119554284364 | bayes_pls_golite062009 |
| protein binding | 1.47118967208188 | bayes_pls_golite062009 |
