YRC Public Data Repository - Protein Structure Prediction

Protein:	LRFN3
Organism:	Homo sapiens
Length:	628 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRFN3.

Description	E-value	Query Range	Subject Range
gi\|55649067 - gi\|55649067\|ref\|XP_524229.1\| PREDICTED: leucine rich repeat and fibronectin type III domain containi...	0.0	[17..628]	[17..628]
gi\|37181360 - gi\|37181360\|gb\|AAQ88494.1\| AILP5865 [Homo sapiens]	0.0	[17..628]	[17..627]
gi\|109124419 - gi\|109124419\|ref\|XP_001100482.1\| PREDICTED: similar to leucine rich repeat and fibronectin type III ...	0.0	[17..628]	[17..628]
LRFN3_MOUSE - Leucine-rich repeat and fibronectin type-III domain-containing protein 3 OS=Mus musculus GN=Lrfn3 PE...	0.0	[25..628]	[25..626]
LRFN3_RAT - Leucine-rich repeat and fibronectin type-III domain-containing protein 3 OS=Rattus norvegicus GN=Lrf...	0.0	[17..628]	[17..626]
gi\|47220103 - gi\|47220103\|emb\|CAF99016.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-99	[11..617]	[14..611]

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Predicted Domain #1

Region A:
Residues: [1-532]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILPLLLCL LPLAPASSPP QSATPSPCPR RCRCQTQSLP LSVLCPGAGL LFVPPSLDRR  60
   61 AAELRLADNF IASVRRRDLA NMTGLLHLSL SRNTIRHVAA GAFADLRALR ALHLDGNRLT 120
  121 SLGEGQLRGL VNLRHLILSN NQLAALAAGA LDDCAETLED LDLSYNNLEQ LPWEALGRLG 180
  181 NVNTLGLDHN LLASVPAGAF SRLHKLARLD MTSNRLTTIP PDPLFSRLPL LARPRGSPAS 240
  241 ALVLAFGGNP LHCNCELVWL RRLAREDDLE ACASPPALGG RYFWAVGEEE FVCEPPVVTH 300
  301 RSPPLAVPAG RPAALRCRAV GDPEPRVRWV SPQGRLLGNS SRARAFPNGT LELLVTEPGD 360
  361 GGIFTCIAAN AAGEATAAVE LTVGPPPPPQ LANSTSCDPP RDGDPDALTP PSAASASAKV 420
  421 ADTGPPTDRG VQVTEHGATA ALVQWPDQRP IPGIRMYQIQ YNSSADDILV YRMIPAESRS 480
  481 FLLTDLASGR TYDLCVLAVY EDSATGLTAT RPVGCARFST EPALRPCGAP HA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	2id5A
Description:	No description for 2id5A was found.

Predicted Domain #2

Region A:
Residues: [533-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLGGTMIIA LGGVIVASVL VFIFVLLMRY KVHGGQPPGK AKIPAPVSSV CSQTNGALGP  60
   61 TPTPAPPAPE PAALRAHTVV QLDCEPWGPG HEPVGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits