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View Structure Prediction Details

Protein: gi|110289212
Organism: Oryza sativa Japonica Group
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110289212.

Description E-value Query
Range
Subject
Range
gi|33242903 - gi|33242903|gb|AAQ01155.1| GS1-like protein [Oryza sativa (japonica cultivar-group)]
gi|125575069, gi... - gi|37535176|ref|NP_921890.1| putative glutamine synthetase [Oryza sativa (japonica cultivar-group)],...
332.0 [0..1] [397..1]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAPKPIARL ISHVILDLDG TLLNTDCVVS QVLKPFLVKN GKKWDSKKAH KLVGKTPYEA  60
   61 AAVVLEDYGL PYSTEEFLSM LTPMFNEQWC NIKALPGANR LIKHLKSNGV PAALASNSPR 120
  121 SNIDAKISCH QGWKESFSAI VGGDEVEKGK PSPDIFLEAA KRMNTNPPNC LVIEDSLPGV 180
  181 AAGKAAGMHV IAVPSVPKRT AEFSSADEVI NSLLDVKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.045757
Match: 1lvhA
Description: beta-Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009
nucleic acid binding 0.263520144636139 bayes_pls_golite062009
phosphatase activity 0.159899259988948 bayes_pls_golite062009
hydrolase activity 0.157008618907775 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.103902756538853 bayes_pls_golite062009
DNA binding 0.0142681844140111 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [219-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKWGLPPFSD WIDDTLPIEP WFIGGPVIKG FGRGSKVLGI PTANLPAENF SDVLSEHTSG  60
   61 VYFGWAGLST RGIFKMVMSI GWNPYFDNTE KTIEPWLLHD FGEDFYGEEL RLVIVGYIRP 120
  121 EANFPSLESL IERIHEDARI SDKALNLPLY AKYKDSPYLR NSLKEDNSAN GNQSVIDSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1q9sA
Description: Crystal structure of riboflavin kinase with ternary product complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin kinase activity 9.29267848240079 bayes_pls_golite062009
FMN adenylyltransferase activity 7.46254172012226 bayes_pls_golite062009
kinase activity 2.06841232315201 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 2.04516341526682 bayes_pls_golite062009
adenylyltransferase activity 2.0444249049462 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.03375669869689 bayes_pls_golite062009
catalytic activity 2.03120709726017 bayes_pls_golite062009
transferase activity 1.98609814060536 bayes_pls_golite062009
nucleotidyltransferase activity 1.19728391053646 bayes_pls_golite062009

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