| Protein: | SSP1A_ORYSA |
| Organism: | Oryza sativa |
| Length: | 641 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSP1A_ORYSA.
| Description | E-value | Query Range |
Subject Range |
|
|
718.0 | [0..1] | [624..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MTDGHLFNNI LLGGRAGSNP GQFKVYSGGL AWKRQGGGKT IEIEKSDLTS VTWMKVPRAY 60
61 QLGVRTKDGL FYKFIGFREQ DVSSLTNFMQ KNMGLSPDEK QLSVSGQNWG GIDINGNMLT 120
121 FMVGSKQAFE VSLADVSQTQ MQGKTDVLLE FHVDDTTGGN E
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-464] |
1 11 21 31 41 51
| | | | | |
1 KDSLMDLSFH VPTSNTQFLG DENRTAAQVL WETIMGVADV DSSEEAVVTF EGIAILTPRG 60
61 RYSVELHLSF LRLQGQANDF KIQYSSIVRL FLLPKSNNPH TFVVVTLDPP IRKGQTLYPH 120
121 IVIQFETEAV VERNLALTKE VLAEKYKDRL EESYKGLIHE VFTKVLRGLS GAKVTRPGSF 180
181 RSCQDGYAVK SSLKAEDGLL YPLEKGFFFL PKPPTLILHE EIEFVEFERH GAGGASISSH 240
241 YFDLLVKLKN DQEHLFRNIQ RSEYHNLFNF INGKHLKIMN LGDGQGATGG VTAVLRDTDD 300
301 DAV
|
| Detection Method: | |
| Confidence: | 91.522879 |
| Match: | 2gcjA |
| Description: | No description for 2gcjA was found. |
|
Region A: Residues: [465-527] |
1 11 21 31 41 51
| | | | | |
1 DPHLERIKNQ AGDEESDEED EDFVADKDDS GSPTDDSGGE DSDASESGGE KEKLSKKEAS 60
61 SSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [528-641] |
1 11 21 31 41 51
| | | | | |
1 PPVKRKPKGR DEEGSDKRKP KKKKDPNAPK RAMTPFMYFS MAERGNMKNN NPDLPTTEIA 60
61 KKLGEMWQKM TGEEKQPYIQ QSQVDKKRYE KESAVYRGAA AMDVDSGSGG NESD
|
| Detection Method: | |
| Confidence: | 25.30103 |
| Match: | 1o4xB |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription repressor activity | 3.17018042329608 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.96229555092695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.75319687398598 | bayes_pls_golite062009 |
| transcription activator activity | 1.62744929149746 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.51189746794562 | bayes_pls_golite062009 |
| protein binding | 1.131658134984 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| chromatin binding | 0.996049314969019 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.4255419067266 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.392549154964715 | bayes_pls_golite062009 |
| open form four-way junction DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| bent DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| crossed form four-way junction DNA binding | 0.293183929205961 | bayes_pls_golite062009 |
| DNA secondary structure binding | 0.18003196535795 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0654173145582195 | bayes_pls_golite062009 |
