YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57208456, gi\|...
Organism:	Homo sapiens
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57208456, gi|....

Description	E-value	Query Range	Subject Range
gi\|57208454 - gi\|57208454\|emb\|CAI42394.1\| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]	262.0	[0..1]	[257..1]
gi\|109072797 - gi\|109072797\|ref\|XP_001107281.1\| PREDICTED: similar to RIKEN cDNA 2410075D05 isoform 2 [Macaca mulat...	261.0	[0..1]	[257..1]
TRM11_PONPY, CF0... - tRNA guanosine-2'-O-methyltransferase TRM11 homolog - Pongo pygmaeus (Orangutan), Putative RNA methy... TRM11_PONAB - tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii GN=TRMT11 PE=2 SV=1	260.0	[0..1]	[257..1]
gi\|114051171 - gi\|114051171\|ref\|NP_082880.2\| tRNA methyltransferase 11 [Mus musculus]	259.0	[0..1]	[257..1]
gi\|114609173 - gi\|114609173\|ref\|XP_001166097.1\| PREDICTED: chromosome 6 open reading frame 75 isoform 5 [Pan troglo...	256.0	[0..1]	[257..1]
TRM11_RAT - tRNA (guanine(10)-N2)-methyltransferase homolog OS=Rattus norvegicus GN=Trmt11 PE=2 SV=1	256.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSCTLNRY LLLMAQEHLE FRLPEIKSLL LLFGGQFASS QETYGKSPFW ILSIPSEDIA  60
   61 RNLMKRTVCA KSIFELWGHG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSPEELYSSL KNYPVEKMVP FLHSDSTYKI KIHTFNKTLT QEEKIKRIDA LEFLPFEGKV  60
   61 NLKKPQHVFS VLEDYGLDPN CIPENPHNIY FGRWIADGQR ELIESYSVKK RHFIGNTSMD 120
  121 AGLSFIMANH GKVKENDIVF DPFVGTGGLL IACAHFGAYV YGTDIDYNTV HGLACST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1g60A
Description:	Methyltransferase mboII
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits