YRC Public Data Repository - Protein Structure Prediction

Protein:	ECHM_MOUSE
Organism:	Mus musculus
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECHM_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|49257190 - gi\|49257190\|gb\|AAH72658.1\| Enoyl Coenzyme A hydratase, short chain, 1, mitochondrial [Mus musculus]	311.0	[0..1]	[290..1]
ECHM_RAT - Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1	310.0	[0..1]	[290..1]
ECHS1 - enoyl CoA hydratase, short chain, 1, mitochondrial	303.0	[0..1]	[289..1]
gi\|60652867, gi\|... - gi\|60652867\|gb\|AAX29128.1\| enoyl coenzyme A hydratase short chain 1 mitochondrial [synthetic constru...	302.0	[0..1]	[289..1]
ECHM_PONPY - Enoyl-CoA hydratase, mitochondrial precursor - Pongo pygmaeus (Orangutan) ECHM_PONAB - Enoyl-CoA hydratase, mitochondrial OS=Pongo abelii GN=ECHS1 PE=2 SV=1	298.0	[0..1]	[289..1]
ECHM_BOVIN - Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1	295.0	[0..1]	[289..1]

Back

Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALRALLPR ACSSLLSSVR CPELRRFASG ANFQYIITEK KGKNSSVGLI QLNRPKALNA  60
   61 LCNGLIEELN QALETFEQDP AVGAIVLTGG DKAFAAGADI KEMQNRTFQD CYSSKFLSHW 120
  121 DHITRVKKPV IAAVNGYALG GGCELAMMCD IIYAGEKAQF GQPEILLGTI PGAGGTQRLT 180
  181 RAVGKSLAME MVLTGDRISA QDAKQAGLVS KIFPVEKLVE EAIQCAEKIA SNSKIVVAMA 240
  241 KESVNAAFEM TLTEGNKLEK RLFYSTFATD DRREGMTAFV EKRKANFKDH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.39794
Match:	2hw5A
Description:	No description for 2hw5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits