YRC Public Data Repository - Protein Structure Prediction

Protein:	RS13_PSEE4
Organism:	Pseudomonas entomophila L48
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS13_PSEE4.

Description	E-value	Query Range	Subject Range
RS13_MARHV - 30S ribosomal protein S13 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	165.0	[0..1]	[118..1]
RS13_PSEA7 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1	163.0	[0..1]	[118..1]
gi\|49074668 - gi\|49074668\|gb\|AAT49419.1\| PA4241 [synthetic construct]	162.0	[0..1]	[118..1]
RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194548090, gi... - gi\|84318950\|ref\|ZP_00967362.1\| COG0099: Ribosomal protein S13 [Pseudomonas aeruginosa C3719], gi\|254... gi\|107103757 - gi\|107103757\|ref\|ZP_01367675.1\| hypothetical protein PaerPA_01004828 [Pseudomonas aeruginosa PACS2] RS13_PSEA8 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsM PE=3 SV=1 RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa GN=rpsM PE=3 SV=1 RS13_PSEAB - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsM PE=3 SV=1	162.0	[0..1]	[118..1]
RS13_PSEPF - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsM PE=3 SV=1	161.0	[0..1]	[118..1]
gi\|67157030, gi\|... - gi\|67157030\|ref\|ZP_00418392.1\| Ribosomal protein S13 [Azotobacter vinelandii AvOP], ref\|ZP_00090924.... RS13_AZOVD - 30S ribosomal protein S13 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsM PE=3 SV=1	161.0	[0..1]	[118..1]
RS13_PSEF5 - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsM PE=3 SV=1 tr\|F2KLW9\|F2KLW9... - 30S ribosomal protein S13 OS=Pseudomonas brassicacearum (strain NFM421) GN=rpsM PE=3 SV=1	160.0	[0..1]	[118..1]
RS13_SACD2 - 30S ribosomal protein S13 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpsM...	160.0	[0..1]	[118..1]
RS13_MANSM - 30S ribosomal protein S13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsM PE=3 SV=1	159.0	[0..1]	[118..1]
RS13_PSEU2 - 30S ribosomal protein S13 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpsM PE=3 SV=1 RS13_PSESM - 30S ribosomal protein S13 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rpsM PE=3 SV=1 gi\|237797454 - gi\|237797454\|ref\|ZP_04585915.1\| 30S ribosomal protein S13 [Pseudomonas syringae pv. oryzae str. 1_6] RS13_PSE14 - 30S ribosomal protein S13 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=rpsM... gi\|213969236, gi... - gi\|213969236\|ref\|ZP_03397374.1\| 30S ribosomal protein S13 [Pseudomonas syringae pv. tomato T1], gi\|2... RS13_PSESM - 30S ribosomal protein S13 OS=Pseudomonas syringae pv. tomato GN=rpsM PE=3 SV=1 tr\|F3G9W3\|F3G9W3... - 30S ribosomal protein S13 OS=Pseudomonas syringae pv. pisi str. 1704B GN=rpsM PE=3 SV=1	159.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGVNIP DNKHTVISLT YIYGVGRTTA QKICADAGVN PAAKIKDLSD EQIETLRGEV  60
   61 AKFTTEGDLR RDINMKIKRL MDLGCYRGLR HRKGLPVRGQ RTKTNARTRK GPRKPIRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	1vs5M
Description:	No description for 1vs5M was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits