Protein: | Dscam-PV |
Organism: | Drosophila melanogaster |
Length: | 2016 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PV.
Description | E-value | Query Range |
Subject Range |
|
1583.0 | [0..3] | [2016..3] |
Region A: Residues: [1-138] |
1 11 21 31 41 51 | | | | | | 1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60 61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120 121 NQFGSIISRD VHVRAVVA |
Detection Method: | |
Confidence: | 82.221849 |
Match: | 2v5sA |
Description: | No description for 2v5sA was found. |
Region A: Residues: [139-247] |
1 11 21 31 41 51 | | | | | | 1 QYYDTDVNKA YVIRGNAAVL KCEIPSFVAD FVSVVSWHTD QNEDFLPGSE YDGKYLVLPS 60 61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPIGSKAP |
Detection Method: | |
Confidence: | 10.154902 |
Match: | 1igtB |
Description: | Immunoglobulin heavy chain variable domain, VH; Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma; Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma; Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
telethonin binding | 6.64811984458494 | bayes_pls_golite062009 |
alpha-actinin binding | 5.77350124471385 | bayes_pls_golite062009 |
actinin binding | 5.69539760434923 | bayes_pls_golite062009 |
structural constituent of muscle | 4.93896503565413 | bayes_pls_golite062009 |
olfactory receptor activity | 4.21057154107121 | bayes_pls_golite062009 |
antigen binding | 4.06466268219034 | bayes_pls_golite062009 |
receptor activity | 4.00123250685257 | bayes_pls_golite062009 |
transmembrane receptor activity | 3.81769911097805 | bayes_pls_golite062009 |
binding | 3.17641566810715 | bayes_pls_golite062009 |
signal transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
molecular transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
peptide antigen binding | 2.94721224577771 | bayes_pls_golite062009 |
fibroblast growth factor 1 binding | 2.83860944503193 | bayes_pls_golite062009 |
growth factor binding | 2.28613301180608 | bayes_pls_golite062009 |
protein binding | 2.22855404705168 | bayes_pls_golite062009 |
extracellular matrix structural constituent | 1.97667893885412 | bayes_pls_golite062009 |
IgG binding | 1.92633562075074 | bayes_pls_golite062009 |
receptor binding | 1.70260377709721 | bayes_pls_golite062009 |
cytoskeletal protein binding | 1.58610597245454 | bayes_pls_golite062009 |
transmembrane receptor protein tyrosine kinase activity | 1.52958974617075 | bayes_pls_golite062009 |
actin binding | 1.42681407553255 | bayes_pls_golite062009 |
cell adhesion molecule binding | 1.36789541796983 | bayes_pls_golite062009 |
protein kinase activity | 1.36635494500222 | bayes_pls_golite062009 |
nucleic acid binding | 1.32330470851159 | bayes_pls_golite062009 |
transmembrane receptor protein kinase activity | 1.30657787244536 | bayes_pls_golite062009 |
fibroblast growth factor binding | 1.27793818082552 | bayes_pls_golite062009 |
fibroblast growth factor receptor activity | 1.24730237107473 | bayes_pls_golite062009 |
DNA binding | 1.19412627500732 | bayes_pls_golite062009 |
myosin light chain kinase activity | 1.17845072849922 | bayes_pls_golite062009 |
transcription regulator activity | 1.16252234499274 | bayes_pls_golite062009 |
G-protein coupled receptor activity | 1.02428106476324 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 1.02286631988334 | bayes_pls_golite062009 |
kinase activity | 0.929878054374821 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.878595022643164 | bayes_pls_golite062009 |
protein complex binding | 0.83543827718565 | bayes_pls_golite062009 |
actin filament binding | 0.760856470721016 | bayes_pls_golite062009 |
peptide binding | 0.729048089532569 | bayes_pls_golite062009 |
collagen binding | 0.635057461053063 | bayes_pls_golite062009 |
cytokine binding | 0.631436442105379 | bayes_pls_golite062009 |
titin binding | 0.599892148302011 | bayes_pls_golite062009 |
integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
structural molecule activity | 0.567620977360967 | bayes_pls_golite062009 |
protein serine/threonine kinase activity | 0.564762108830441 | bayes_pls_golite062009 |
transcription factor activity | 0.54549168007511 | bayes_pls_golite062009 |
myosin heavy chain binding | 0.49788128784685 | bayes_pls_golite062009 |
cytokine receptor activity | 0.34165331857492 | bayes_pls_golite062009 |
protein tyrosine kinase activity | 0.318890055375093 | bayes_pls_golite062009 |
structural constituent of cytoskeleton | 0.0579247757286607 | bayes_pls_golite062009 |
Region A: Residues: [248-895] |
1 11 21 31 41 51 | | | | | | 1 SVPTGVMVFQ QQVPLLSTFA MLCQAQAFPV PVFRWYKFIE GTTRKQAVVL NDRVKQVSGT 60 61 LIIKDAVVED SGKYLCVVNN SVGGESVETV LTVTAPLSAK IDPPTQTVDF GRPAVFTCQY 120 121 TGNPIKTVSW MKDGKAIGHS EPVLRIESVK KEDKGMYQCF VRNDQESAEA SAELKLGGRF 180 181 DPPVIRQAFQ EETMEPGPSV FLKCVAGGNP TPEISWELDG KKIANNDRYQ VGQYVTVNGD 240 241 VVSYLNITSV HANDGGLYKC IAKSKVGVAE HSAKLNVYGL PYIRQMEKKA IVAGETLIVT 300 301 CPVAGYPIDS IVWERDNRAL PINRKQKVFP NGTLIIENVE RNSDQATYTC VAKNQEGYSA 360 361 RGSLEVQVMA PPKITPFSFG EEPANVEDSV SVTCLISTGD LPIDIEWFFN EYGISSYSGI 420 421 SVMKGGKRNS VLSIDSVQAR HAGNYSCRAK NHAAAVNYTT DLIVNVPPRW ILEPTDKAFA 480 481 QGSDAKVECK ADGFPKPQVT WKKAVGDTPG EYKDLKKSDN IRVEEGTLHV DNIQKTNEGY 540 541 YLCEAINGIG SGLSAVIMIS VQAPPEFTEK LRNQTARRGE PAVLQCEAKG EKPIGILWNM 600 601 NNMRLDPKND NRYTIREEIL STGVMSSLSI KRTERSDSAL FTCVATNA |
Detection Method: | |
Confidence: | 59.0 |
Match: | 1e07A |
Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [896-996] |
1 11 21 31 41 51 | | | | | | 1 FGSDDASINM IVQEVPEMPY ALKVLDKSGR SVQLSWAQPY DGNSPLDRYI IEFKRSRASW 60 61 SEIDRVIVPG HTTEAQVQKL SPATTYNIRI VAENAIGTSQ S |
Detection Method: | |
Confidence: | 34.69897 |
Match: | 2nziA |
Description: | No description for 2nziA was found. |
Region A: Residues: [997-1103] |
1 11 21 31 41 51 | | | | | | 1 SEAVTIITAE EAPSGKPQNI KVEPVNQTTM RVTWKPPPRT EWNGEILGYY VGYKLSNTNS 60 61 SYVFETINFI TEEGKEHNLE LQNLRVYTQY SVVIQAFNKI GAGPLSE |
Detection Method: | |
Confidence: | 11.0 |
Match: | 2edxA |
Description: | No description for 2edxA was found. |
Region A: Residues: [1104-1213] |
1 11 21 31 41 51 | | | | | | 1 EEKQFTAEGT PSQPPSDTAC TTLTSQTIRV GWVSPPLESA NGVIKTYKVV YAPSDEWYDE 60 61 TKRHYKKTAS SDTVLHGLKK YTNYTMQVLA TTAGGDGVRS VPIHCQTEPD |
Detection Method: | |
Confidence: | 20.221849 |
Match: | 1qg3A |
Description: | Integin beta-4 subunit |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1214-1728] |
1 11 21 31 41 51 | | | | | | 1 VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF 60 61 EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMPSDQVPA KIASFDDTFT ATFKEDAKMP 120 121 CLAVGAPQPE ITWKIKGVEF SANDRMRVLP DGSLLIKSVN RQDAGDYSCH AENSIAKDSI 180 181 THKLIVLAPP QSPHVTLSAT TTDALTVKLK PHEGDTAPLH GYTLHYKPEF GEWETSEVSV 240 241 DSQKHNIEGL LCGSRYQVYA TGFNNIGAGE ASDILNTRTK GQKPKLPEKP RFIEVSSNSV 300 301 SLHFKAWKDG GCPMSHFVVE SKKRDQIEWN QISNNVKPDN NYVVLDLEPA TWYNLRITAH 360 361 NSAGFTVAEY DFATLTVTGG TIAPSRDLPE LSAEDTIRII LSNLNLVVPV VAALLVIIIA 420 421 IIVICILRSK GNHHKDDVVY NQTMGPGATL DKRRPDLRDE LGYIAPPNRK LPPVPGSNYN 480 481 TCDRIKRGRG GLRSNHSTWD PRRNPNLYEE LKAPP |
Detection Method: | |
Confidence: | 26.045757 |
Match: | 2v5yA |
Description: | No description for 2v5yA was found. |
Region A: Residues: [1729-1903] |
1 11 21 31 41 51 | | | | | | 1 VPMHGNHYGH AHGNAECHYR HPGMEDEICP YATFHLLGFR EEMDPTKAMN FQTFPHQNGH 60 61 AGPVPGHAGT MLPPGHPGHV HSRSGSQSMP RANRYQRKNS QGGQSSIYTP APEYDDPANC 120 121 AEEDQYRRYT RVNSQGGSLY SGPGPEYDDP ANCAPEEDQY GSQYGGPYGQ PYDHY |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1904-2016] |
1 11 21 31 41 51 | | | | | | 1 GSRGSMGRRS IGSARNPGNG SPEPPPPPPR NHDMSNSSFN DSKESNEISE AECDRDHGPR 60 61 GNYGAVKRSP QPKDQRTTEE MRKLIERNET GPKQLQLQQA NGAGFTAYDT MAV |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.