| Protein: | Dscam-PAV |
| Organism: | Drosophila melanogaster |
| Length: | 2034 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAV.
| Description | E-value | Query Range |
Subject Range |
|
|
1488.0 | [0..3] | [2034..3] |
|
Region A: Residues: [1-428] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVHQF YQTRVIDEFV LRGNSATLKC LVPSFVADFI DVEGWIDEEG 180
181 VEILRPLPDD SVDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
241 ITEPVGSVAP KVDIKDEINY ARVGQDRSLA IVCPAQSYPV PAFRWYKFIE GTTRKQAVVL 300
301 NDRVKQVSGT LIIKDAVVED SGKYLCVVNN SVGGESVETV LTVTAPLSAK IDPPTQTVDF 360
361 GRPAVFTCQY TGNPIKTVSW MKDGKAIGHS EPVLRIESVK KEDKGMYQCF VRNDQESAEA 420
421 SAELKLGG
|
| Detection Method: |  |
| Confidence: | 78.221849 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [429-537] |
1 11 21 31 41 51
| | | | | |
1 RFDPPVIRQA FQEETMEPGP SVFLKCVAGG NPTPEISWEL DGKKIANNDR YQVGQYVTVN 60
61 GDVVSYLNIT SVHANDGGLY KCIAKSKVGV AEHSAKLNVY GLPYIRQME
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 2v9qA |
| Description: | No description for 2v9qA was found. |
|
Region A: Residues: [538-820] |
1 11 21 31 41 51
| | | | | |
1 KKAIVAGETL IVTCPVAGYP IDSIVWERDN RALPINRKQK VFPNGTLIIE NVERNSDQAT 60
61 YTCVAKNQEG YSARGSLEVQ VMVLPQIVPF DFGEETVNEL DMVSASCTVN KGDLPIDVAW 120
121 TKNGGRVYTN DGIVVTKTST RMSVLSIESA RARHAGNYSC VATNNAGETR QWAVLAVNVP 180
181 PRWILEPTDK AFAQGSDAKV ECKADGFPKP QVTWKKAVGD TPGEYKDLKK SDNIRVEEGT 240
241 LHVDNIQKTN EGYYLCEAIN GIGSGLSAVI MISVQAPPEF TEK
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1ry7B |
| Description: | Crystal Structure of the 3 Ig form of FGFR3c in complex with FGF1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 6.64811984458494 | bayes_pls_golite062009 |
| alpha-actinin binding | 5.77350124471385 | bayes_pls_golite062009 |
| actinin binding | 5.69539760434923 | bayes_pls_golite062009 |
| structural constituent of muscle | 4.93896503565413 | bayes_pls_golite062009 |
| olfactory receptor activity | 4.21057154107121 | bayes_pls_golite062009 |
| antigen binding | 4.06466268219034 | bayes_pls_golite062009 |
| receptor activity | 4.00123250685257 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.81769911097805 | bayes_pls_golite062009 |
| binding | 3.17641566810715 | bayes_pls_golite062009 |
| molecular transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| signal transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| peptide antigen binding | 2.94721224577771 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 2.83860944503193 | bayes_pls_golite062009 |
| growth factor binding | 2.28613301180608 | bayes_pls_golite062009 |
| protein binding | 2.22855404705168 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 1.97667893885412 | bayes_pls_golite062009 |
| IgG binding | 1.92633562075074 | bayes_pls_golite062009 |
| receptor binding | 1.70260377709721 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.58610597245454 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 1.52958974617075 | bayes_pls_golite062009 |
| actin binding | 1.42681407553255 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.36789541796983 | bayes_pls_golite062009 |
| protein kinase activity | 1.36635494500222 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32330470851159 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 1.30657787244536 | bayes_pls_golite062009 |
| fibroblast growth factor binding | 1.27793818082552 | bayes_pls_golite062009 |
| fibroblast growth factor receptor activity | 1.24730237107473 | bayes_pls_golite062009 |
| DNA binding | 1.19412627500732 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.17845072849922 | bayes_pls_golite062009 |
| transcription regulator activity | 1.16252234499274 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.02428106476324 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.02286631988334 | bayes_pls_golite062009 |
| kinase activity | 0.929878054374821 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.878595022643164 | bayes_pls_golite062009 |
| protein complex binding | 0.83543827718565 | bayes_pls_golite062009 |
| actin filament binding | 0.760856470721016 | bayes_pls_golite062009 |
| peptide binding | 0.729048089532569 | bayes_pls_golite062009 |
| immunoglobulin binding | 0.64138121404685 | bayes_pls_golite062009 |
| collagen binding | 0.635057461053063 | bayes_pls_golite062009 |
| cytokine binding | 0.631436442105379 | bayes_pls_golite062009 |
| titin binding | 0.599892148302011 | bayes_pls_golite062009 |
| integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
| structural molecule activity | 0.567620977360967 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.564762108830441 | bayes_pls_golite062009 |
| transcription factor activity | 0.54549168007511 | bayes_pls_golite062009 |
| myosin heavy chain binding | 0.49788128784685 | bayes_pls_golite062009 |
| cytokine receptor activity | 0.34165331857492 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.318890055375093 | bayes_pls_golite062009 |
| immunoglobulin receptor activity | 0.117547357032989 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.0579247757286607 | bayes_pls_golite062009 |
| cell surface binding | 0.0515688920405171 | bayes_pls_golite062009 |
|
Region A: Residues: [821-1281] |
1 11 21 31 41 51
| | | | | |
1 LRNQTARRGE PAVLQCEAKG EKPIGILWNM NNMRLDPKND NRYTIREEIL STGVMSSLSI 60
61 KRTERSDSAL FTCVATNAFG SDDASINMIV QEVPEMPYAL KVLDKSGRSV QLSWAQPYDG 120
121 NSPLDRYIIE FKRSRASWSE IDRVIVPGHT TEAQVQKLSP ATTYNIRIVA ENAIGTSQSS 180
181 EAVTIITAEE APSGKPQNIK VEPVNQTTMR VTWKPPPRTE WNGEILGYYV GYKLSNTNSS 240
241 YVFETINFIT EEGKEHNLEL QNLRVYTQYS VVIQAFNKIG AGPLSEEEKQ FTAEGTPSQP 300
301 PSDTACTTLT SQTIRVGWVS PPLESANGVI KTYKVVYAPS DEWYDETKRH YKKTASSDTV 360
361 LHGLKKYTNY TMQVLATTAG GDGVRSVPIH CQTEPDVPEA PTDVKALVMG NAAILVSWRP 420
421 PAQPNGIITQ YTVYSKAEGA ETETKTQKVP HYQMSFEATE L
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1282-1321] |
1 11 21 31 41 51
| | | | | |
1 EKNKPYEFWV TASTTIGEGQ QSKSIVAMPS DQVPAKIASF
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1zlgA |
| Description: | No description for 1zlgA was found. |
|
Region A: Residues: [1322-1392] |
1 11 21 31 41 51
| | | | | |
1 DDTFTATFKE DAKMPCLAVG APQPEITWKI KGVEFSANDR MRVLPDGSLL IKSVNRQDAG 60
61 DYSCHAENSI A
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1393-1598] |
1 11 21 31 41 51
| | | | | |
1 KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT APLHGYTLHY KPEFGEWETS 60
61 EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN TRTKGQKPKL PEKPRFIEVS 120
121 SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV KPDNNYVVLD LEPATWYNLR 180
181 ITAHNSAGFT VAEYDFATLT VTGGTI
|
| Detection Method: | |
| Confidence: | 10.30103 |
| Match: | 2ibgA |
| Description: | No description for 2ibgA was found. |
|
Region A: Residues: [1599-1776] |
1 11 21 31 41 51
| | | | | |
1 APLDDGSGHG NVHTRIRLPA WMPEWLDLNF MVPLIATVVV VAVGICVVCV ALSRRRADDM 60
61 RGGQKDVYYD VVYNQTMGPG ATLDKRRPDL RDELGYIAPP NRKLPPVPGS NYNTCDRIKR 120
121 GRGGLRSNHS TWDPRRNPNL YEELKAPPVP MHGNHYGHAH GNAECHYRHP GMEDEICP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1777-1862] |
1 11 21 31 41 51
| | | | | |
1 YATFHLLGFR EEMDPTKAMN FQTFPHQNGH AGPVPGHAGT MLPPGHPGHV HSRSGSQSMP 60
61 RANRYQRKNS QGGQSSIYTP APEYDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1863-2034] |
1 11 21 31 41 51
| | | | | |
1 PANCAEEDQY RRYTRVNSQG GSLYSGPGPE YDDPANCAPE EDQYGSQYGG PYGQPYDHYG 60
61 SRGSMGRRSI GSARNPGNGS PEPPPPPPRN HDMSNSSFND SKESNEISEA ECDRDHGPRG 120
121 NYGAVKRSPQ PKDQRTTEEM RKLIERNETG PKQLQLQQAN GAGFTAYDTM AV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
