YRC Public Data Repository - Protein Structure Prediction

Protein:	ERH_MOUSE
Organism:	Mus musculus
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERH_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73964238 - gi\|73964238\|ref\|XP_537493.2\| PREDICTED: similar to Enhancer of rudimentary homolog [Canis familiaris...	204.0	[0..1]	[104..53]
gi\|85543920, gi\|... - gi\|85543920\|pdb\|1WWQ\|A Chain A, Solution Structure Of Mouse Er, gi\|159163463\|pdb\|1WWQ\|A Chain A, Sol...	199.0	[0..1]	[104..8]
gi\|60653899, gi\|... - gi\|60653899\|gb\|AAX29642.1\| enhancer of rudimentary-like [synthetic construct], gi\|30583969\|gb\|AAP362...	196.0	[0..1]	[104..1]
ERH_DANRE - Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=3 SV=1	195.0	[0..1]	[104..1]
gi\|57529979, gi\|... - gi\|57529979\|ref\|NP_001006475.1\| enhancer of rudimentary homolog [Gallus gallus], gi\|53136610\|emb\|CAG...	190.0	[0..1]	[104..1]
gi\|110748988 - gi\|110748988\|ref\|XP_001119900.1\| PREDICTED: similar to enhancer of rudimentary CG1871-PA, isoform A ...	183.0	[0..1]	[100..1]
ERH_AEDAE - Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1	182.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTILLVQP TKRPEGRTYA DYESVNECME GVCKMYEEHL KRMNPNSPSI TYDISQLFDF  60
   61 IDDLADLSCL VYRADTQTYQ PYNKDWIKEK IYVLLRRQAQ QAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1wwqA
Description:	Solution Structure of Mouse ER
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits