YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG4467-PB
Organism: Drosophila melanogaster
Length: 1125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4467-PB.

Description E-value Query
Range
Subject
Range
gi|40714563 - gi|40714563|gb|AAR88540.1| RE71243p [Drosophila melanogaster]
771.0 [0..1] [1125..1]

Back

Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCGFCCGN MSKRDYKVAT TDGIELEPLG GEKCDKDKDK DKEKQTNGVT FGGESSGGRQ  60
   61 TRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVAVCSQRRA LLVAGIVLGS LLLTAIIIAY AGPQNDCSCG SKTVSGYETD EENNTQPFNP  60
   61 IATNGEPFPW LEKMLPTSVR PLRYMVTIHP NLTTLDVKGQ VTIDLHVEKE TNFIVLHIQD 120
  121 LNVTEKAIVT PGPKGYALKI VKVLEFPPRQ QLYIEVKERL KKKSNYTLNL RWYSKLNPEP 180
  181 EGFYVDQYES SNGVERLLAA TVFRPNGARR AFPCFDEPHV RAPFR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.37
Match: 1hs6A
Description: Leukotriene A4 hydrolase C-terminal domain; Leukotriene A4 hydrolase N-terminal domain; Leukotriene A4 hydrolase catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [289-1125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISVFRDRFHI GLSNSIVHTT EDVGFYMGTG LLRDDFIETP PLPADAVAWV VSDFQRESLQ  60
   61 PSAAYIPTTP APPGSGVGGK KSAQLNNYTQ LKGKNPPVRN ITALTHSLNV NLTPRQNLTV 120
  121 VQPTTTTAWP VNLNGNGKPS NLTSLSQSTG SSIKRAPSYT FYAPRDLLIR SSFILHTSRD 180
  181 VLEYLQTWLD ISYPLTKVDF VALPSLDRNM ISSLGLVTLK TSFLTDPSSI TSEQYQFSAL 240
  241 RIAEAMVRQF FGGITSRKVL KDVWLWEGLI QYLGIHALAP LQETWPLREM YLLKMATAAL 300
  301 DIDAIQGWDS IMNGTSHDGN NEEFFVQKTA AIFSMLHTAI GEDRFRGCLG SFLKVNRFRT 360
  361 AEPTDLWTIC TKKANGSKNI KDMMTLWTHQ PGFPLLTVTK MGNSISISQR PFRPAEFLAI 420
  421 HDDSYDGNNY NKTTLNATDM PSTVATTTQG SKHKVAPHMK WIFPVTYVTD INNVSETLWM 480
  481 QNVDVTFNVP ENVKWIKVNA IQNGYYRVVY NDDNWASLIE ELAANPNRFT SEDRLGMLSD 540
  541 AFTLCHANLL PCEITMNMIQ YLPSETHYGP MALALRHLEK WRRILKYSEC FLMLSEFIKM 600
  601 KISTVMEKVG WSDDGDVATR LLRPEVLLAS VLWEDIDSIT KAKNMLNQYL YYNGTAIPPN 660
  661 LREVVYTGSI LSGEYIYWQH CWERFVNLQR TSETFVERMQ LLRALGRTKD AWLQNRLLSH 720
  721 VTMLPTEEVV QVLKAIAGTP TGGAMACRFL QAKWFELEKR LGPGTISFAK VISAITQYGA 780
  781 TKFDYDELKS LVHRFGRGHG MSVLNMTLSS VASNVEWVAR SQTSLYKWVE GNLHSHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 1z1wA
Description: Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle