YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109625657, gi...
Organism:	Haloquadratum walsbyi DSM 16790
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109625657, gi....

Description	E-value	Query Range	Subject Range
gi\|55380234, gi\|... - gi\|55380234\|ref\|YP_138083.1\| universal stress protein 1 [Haloarcula marismortui ATCC 43049], gi\|5523...	242.0	[0..1]	[293..1]
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	238.0	[0..3]	[293..11]
gi\|56964964, gi\|... - gi\|56964964\|ref\|YP_176695.1\| hypothetical protein ABC3200 [Bacillus clausii KSM-K16], gi\|56911207\|db...	208.0	[0..1]	[288..1]
gi\|83756959, gi\|... - gi\|83815565\|ref\|YP_446095.1\| universal stress protein [Salinibacter ruber DSM 13855], gi\|83756959\|gb...	205.0	[0..2]	[291..34]
gi\|127512922, gi... - gi\|78367942\|ref\|ZP_00838199.1\| UspA [Shewanella sp. PV-4], gi\|78360023\|gb\|EAP01868.1\| UspA [Shewanel...	197.0	[0..2]	[288..4]
gi\|119767435, gi... - gi\|68548184\|ref\|ZP_00587699.1\| UspA [Shewanella amazonensis SB2B], gi\|68514129\|gb\|EAN37875.1\| UspA [...	196.0	[0..2]	[288..4]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHERILLPYD GSEGAGEMLH HASEVAHWFD ATIQLLYVAD TTRDSVTVVE GDTIDMLEQK  60
   61 GETVVSDAAQ TLNTLGVTYD TDVVQGNPAA TIVEYAKRYD QDLIMMPTHA REGLSRYLIG 120
  121 SVSEKVVRLS SIPVLTIRVQ SDEPIIFPYE NILVPTDGST AAMHAAKHVF SAAASLDATV 180
  181 HVISVADTAG FSPHVRSTTS GRDTKQAASD AVETAISEAE TRGVIDTVRH VTQGTPVREI 240
  241 LDYIESNNIH AVGMGTTGRR GTDRILLGSV AEKVVRSAPV PVMTVADSTE HGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	2jaxA
Description:	No description for 2jaxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits