YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|109626138, gi...
Organism: Haloquadratum walsbyi DSM 16790
Length: 860 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|109626138, gi....

Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPILSLSEL RTQFSTERGQ VKAVDDVSLD VHAGETVGLV GESGSGKSVT ALSAMGLIDD  60
   61 PGQVIGGEVT IQSASLAEMF RDQYTDLSFV DGDQILLTEA PEEALRSVRG AEMSMIFQDP 120
  121 MTSLNPALTI GEQVAESLKL HQFGNRKKDT WINAIREMLT RIRSNPDNAV VERTIDVLSQ 180
  181 VGISEPASRI DEYPHEFSGG MRQRVLIAIA LACQPNILIA DEPTTALDVT IQAQILELIN 240
  241 ELQADLGMGV LFITHDLGVV AETCDRVAVM YAGKIVEEGP VEEIFTNPSH PYTYALLES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 2r6fA
Description: No description for 2r6fA was found.

Predicted Domain #2
Region A:
Residues: [300-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPTANRDRLT PIDGNVPDLI DMPEGCNFAP RCPWAEPACR HGDIASRQHG PADVDHRAKC  60
   61 IL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.0
Match: PF08352.4
Description: No description for PF08352.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [362-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEFNEDEYGT DADLTAETTM QTSDPILEVD GLQKHFLQSE SPLDEYLELD TERVKAVDGV  60
   61 DLTVYKGETV GLVGESGCGK STTGQSILQL IEPTDGRVVF AGDDLTDLSK SELRKRRCDL 120
  121 QMIFQDPMSS LDPRMRVEQI IAEPLQIHDL PADTNSSNQT TRKQRVTELL NAVGLDPDQR 180
  181 DRYPHELSGG QRQRVGIARA IAVDPEFIIC DEPVSALDVS VQAQILNLLK DLQSEFGLTF 240
  241 LFIAHDLSVV RHICDRIAVM YLGEIVEIAP TETLFTTPQH PYTRALLSAI PVPDPTAHTD 300
  301 RVILDGDVPS PIDPPSGCHF RTRCPEVIPP DDVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.0
Match: 2it1A
Description: No description for 2it1A was found.

Predicted Domain #4
Region A:
Residues: [696-860]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDQSTYRDIM TLRERVSNAA IDVDAIQEET GVTDEDALID TLSKRYINNP LSGENRRVVN  60
   61 TALKAVVNGD FETATTRLHE RFASVCEQQS PAFETSKESV SSSSGISTAE EAHPTACHRY 120
  121 DDDMNAEPLE VIDTDIDTDT DTDANANTNT DTNTTYADVR RSNTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle