YRC Public Data Repository - Protein Structure Prediction

Protein:	LMIP_MOUSE
Organism:	Mus musculus
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LMIP_MOUSE.

Description	E-value	Query Range	Subject Range
LMIP_RAT - Lens fiber membrane intrinsic protein OS=Rattus norvegicus GN=Lim2 PE=1 SV=1 gi\|265406 - gi\|265406\|gb\|AAB25334.1\| MP20 [Rattus sp.]	191.0	[0..1]	[173..1]
gi\|62185648 - gi\|62185648\|gb\|AAH92386.1\| Lens intrinsic membrane protein 2 [Mus musculus]	190.0	[0..1]	[173..1]
LIM2 - lens intrinsic membrane protein 2, 19kDa	188.0	[0..1]	[173..1]
gi\|114678770 - gi\|114678770\|ref\|XP_001174194.1\| PREDICTED: lens intrinsic membrane protein 2, 19kDa isoform 2 [Pan ...	187.0	[0..1]	[173..1]
gi\|73947813 - gi\|73947813\|ref\|XP_854536.1\| PREDICTED: similar to lens intrinsic membrane protein 2, 19kDa [Canis f...	187.0	[0..1]	[173..1]
gi\|109125767 - gi\|109125767\|ref\|XP_001116341.1\| PREDICTED: lens intrinsic membrane protein 2, 19kDa isoform 1 [Maca...	187.0	[0..1]	[173..1]
LMIP_BOVIN - Lens fiber membrane intrinsic protein OS=Bos taurus GN=LIM2 PE=1 SV=2	186.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSFMGGGLF CAWVGTILLV VATATDHWMQ YRLSGSFAHQ GLWRYCLGNK CFLQTESIAY  60
   61 WNATRAFMIL SALCATSGII MGVLAFAQQS TFTRLSRPFS AGIMFFASTL FVLLALAIYT 120
  121 GVTVSFLGRR FGDWRFSWSY ILGWVALLMT FFAGIFYMCA YRMHECRRLA TPR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.568636
Match:	PF00822.11
Description:	No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits