YRC Public Data Repository - Protein Structure Prediction

Protein:	TNNI3_MOUSE
Organism:	Mus musculus
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TNNI3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50761252 - gi\|50761252\|ref\|XP_419242.1\| PREDICTED: similar to troponin I slow skeletal muscle isoform [Gallus g...	233.0	[0..29]	[210..245]
gi\|74354115 - gi\|74354115\|gb\|AAI02732.1\| LOC511094 protein [Bos taurus]	211.0	[0..9]	[201..58]
gi\|207516, gi\|21... - pir\|\|I56441 troponin I - rat, gi\|207516\|gb\|AAA42294.1\| troponin I	210.0	[0..1]	[211..1]
TNNI3_HORSE - Troponin I, cardiac muscle OS=Equus caballus GN=TNNI3 PE=2 SV=3	199.0	[0..14]	[211..8]
TNNI3_RABIT - Troponin I, cardiac muscle OS=Oryctolagus cuniculus GN=TNNI3 PE=1 SV=2	196.0	[0..2]	[211..1]
gi\|58332668, gi\|... - gi\|69747302\|gb\|AAZ04238.1\| troponin [Xenopus tropicalis], gi\|58332668\|ref\|NP_001011410.1\| troponin I...	195.0	[0..20]	[210..45]
gi\|52430500, gi\|... - gi\|52430500\|gb\|AAH82923.1\| LOC494826 protein [Xenopus laevis], gi\|147907417\|ref\|NP_001088122.1\| hypo...	194.0	[0..20]	[210..46]
TNNI3_CANLF - Troponin I, cardiac muscle OS=Canis lupus familiaris GN=TNNI3 PE=2 SV=3	193.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADESSDAAG EPQPAPAPVR RRSSANYRAY ATEPHAKKKS KISASRKLQL KTLMLQIAKQ  60
   61 EMEREAEERR GEKGRVLRTR CQPLELDGLG FEELQDLCRQ LHARVDKVDE ERYDVEAKVT 120
  121 KNITEIADLT QKIYDLRGKF KRPTLRRVRI SADAMMQALL GTRAKESLDL RAHLKQVKKE 180
  181 DIEKENREVG DWRKNIDALS GMEGRKKKFE G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	1j1eC
Description:	Troponin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits