YRC Public Data Repository - Protein Structure Prediction

Protein:	STP1_MOUSE
Organism:	Mus musculus
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|2140 - gi\|2140\|emb\|CAA34292.1\| transition protein 1 [Sus sp.] gi\|2144748 - pir\|\|BGPG spermatid transition protein 1 - pig STP1_PIG - Spermatid nuclear transition protein 1 OS=Sus scrofa GN=TNP1 PE=1 SV=2	65.0	[0..1]	[55..1]
STP1_PIG - (P17306) Spermatid nuclear transition protein 1 (STP-1) (TP-1) gi\|688356 - gi\|688356\|gb\|AAB31192.1\| transition protein 1, TP1 [boars, testes, Peptide, 54 aa]	63.0	[0..2]	[55..1]
STP1_RAT - Spermatid nuclear transition protein 1 OS=Rattus norvegicus GN=Tnp1 PE=1 SV=2	63.0	[0..1]	[55..1]
STP1_BOVIN - Spermatid nuclear transition protein 1 OS=Bos taurus GN=TNP1 PE=2 SV=2	62.0	[0..1]	[55..1]
gi\|109100944 - gi\|109100944\|ref\|XP_001087783.1\| PREDICTED: transition protein 1 (during histone to protamine replac... TNP1 - transition protein 1 (during histone to protamine replacement) CCDS2406.1_1 - null	62.0	[0..1]	[55..1]
STP1_SHEEP - Spermatid nuclear transition protein 1 OS=Ovis aries GN=TNP1 PE=1 SV=1	61.0	[0..2]	[55..1]
gi\|86211463, gi\|... - gi\|86211473\|gb\|ABC87358.1\| transition protein 1 [Capra nubiana], gi\|86211471\|gb\|ABC87357.1\| transiti... gi\|86211477, gi\|... - gi\|86211477\|gb\|ABC87360.1\| transition protein 1 [Capra sibirica], gi\|86211475\|gb\|ABC87359.1\| transit... gi\|86211479 - gi\|86211479\|gb\|ABC87361.1\| transition protein 1 [Capra pyrenaica] gi\|86211455, gi\|... - gi\|86211455\|gb\|ABC87349.1\| transition protein 1 [Capra caucasica], gi\|86211453\|gb\|ABC87348.1\| transi... gi\|86211457 - gi\|86211457\|gb\|ABC87350.1\| transition protein 1 [Capra cylindricornis] gi\|86211461 - gi\|86211461\|gb\|ABC87352.1\| transition protein 1 [Capra ibex ibex]	55.0	[0..10]	[55..1]
gi\|86211459 - gi\|86211459\|gb\|ABC87351.1\| transition protein 1 [Capra cylindricornis]	54.0	[0..10]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSRKLKTH GMRRGKNRAP HKGVKRGGSK RKYRKSVLKS RKRGDDASRN YRSHL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.79588
Match:	PF02079.7
Description:	No description for PF02079.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.439	N/A	N/A	a.8.5	Description not found.
View	Download	0.272	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.269	N/A	N/A	a.36.1	Signal peptide-binding domain
View	Download	0.266	N/A	N/A	a.5.2	UBA-like
View	Download	0.260	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.252	N/A	N/A	g.58.1	Pheromone ER-23
View	Download	0.242	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.238	N/A	N/A	g.58.1	Pheromone ER-23

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits