YRC Public Data Repository - Protein Structure Prediction

Protein:	IDI1_MOUSE
Organism:	Mus musculus
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDI1_MOUSE.

Description	E-value	Query Range	Subject Range
IDI1_MESAU - Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1	267.0	[0..1]	[227..1]
IDI1_RAT - Isopentenyl-diphosphate Delta-isomerase 1 (EC 5.3.3.2) (IPP isomerase 1) (Isopentenyl pyrophosphate ...	267.0	[0..1]	[227..1]
gi\|6856550 - gi\|6856550\|gb\|AAF29973.1\|AF188060_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	262.0	[0..1]	[227..62]
gi\|35186998 - gi\|35186998\|gb\|AAQ84167.1\| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]	261.0	[0..2]	[227..69]
gi\|50732281 - gi\|50732281\|ref\|XP_418561.1\| PREDICTED: similar to isopentenyl-diphosphate delta isomerase; IPP isom...	261.0	[0..1]	[227..267]
gi\|6856556 - gi\|6856556\|gb\|AAF29976.1\|AF188063_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	260.0	[0..1]	[227..32]
gi\|9971806 - gi\|9971806\|gb\|AAG10423.1\| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes ...	259.0	[0..1]	[227..31]
gi\|147905137, gi... - gi\|52139082\|gb\|AAH82648.1\| LOC494671 protein [Xenopus laevis], gi\|147905137\|ref\|NP_001087986.1\| hypo...	258.0	[0..1]	[227..55]
IDI2_ARATH - Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=1 SV=1	258.0	[0..1]	[227..52]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEINTSHLD EKQVQLLAEM CILIDENDNK IGADTKKNCH LNENIDKGLL HRAFSVFLFN  60
   61 TENKLLLQQR SDAKITFPGC FTNSCCSHPL SNPGELEENN AIGVKRAAKR RLKAELGIPL 120
  121 EEVDLNEMDY LTRIYYKAQS DGIWGEHEVD YILFLRKNVT LNPDPNEIKS YCYVSKEEVR 180
  181 EILKKAASGE IKLTPWFKII ADTFLFKWWD NLNHLSPFVD HEKIHRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	2icjA
Description:	No description for 2icjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits