YRC Public Data Repository - Protein Structure Prediction

Protein:	LY96_MOUSE
Organism:	Mus musculus
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LY96_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|130497370, gi... - gi\|21429696\|gb\|AAM50061.1\| MD-2 [Oryctolagus cuniculus], gi\|130497370\|ref\|NP_001076256.1\| lymphocyte...	265.0	[0..1]	[160..1]
gi\|37624313, gi\|... - gi\|37624313\|gb\|AAQ95744.1\| LPS co-receptor MD-2 [Equus caballus], gi\|126352644\|ref\|NP_001075367.1\| L...	262.0	[0..1]	[160..1]
LY96_BOVIN - Lymphocyte antigen 96 OS=Bos taurus GN=LY96 PE=1 SV=1 gi\|157279741, gi... - gi\|157279741\|ref\|NP_001098426.1\| lymphocyte antigen 96 [Sus scrofa], gi\|154623577\|dbj\|BAF74787.1\| ly...	260.0	[0..1]	[160..1]
LY96_CRIGR - Lymphocyte antigen 96 OS=Cricetulus griseus GN=LY96 PE=2 SV=1	260.0	[0..1]	[160..1]
gi\|194239551 - gi\|194239551\|dbj\|BAG55277.1\| MD2 protein [Pan paniscus] gi\|194239549, gi... - gi\|194440768\|ref\|NP_001123946.1\| lymphocyte antigen 96 [Pan troglodytes], gi\|194239549\|dbj\|BAG55276.... LY96 - lymphocyte antigen 96	258.0	[0..1]	[160..1]
gi\|73999490 - gi\|73999490\|ref\|XP_853138.1\| PREDICTED: similar to Lymphocyte antigen 96 precursor (MD-2 protein) (E...	257.0	[0..1]	[160..1]
gi\|62178543, gi\|... - gi\|66730493\|ref\|NP_001019450.1\| lymphocyte antigen 96 [Rattus norvegicus], gi\|62178543\|gb\|AAX73194.1...	257.0	[0..1]	[160..1]
gi\|194239559, gi... - gi\|194363747\|ref\|NP_001123904.1\| lymphocyte antigen 96 [Macaca mulatta], gi\|194239559\|dbj\|BAG55281.1... gi\|194239557 - gi\|194239557\|dbj\|BAG55280.1\| MD2 protein [Macaca fascicularis]	240.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPFILFSTL LSPILTESEK QQWFCNSSDA IISYSYCDHL KFPISISSEP CIRLRGTNGF  60
   61 VHVEFIPRGN LKYLYFNLFI SVNSIELPKR KEVLCHGHDD DYSFCRALKG ETVNTSIPFS 120
  121 FEGILFPKGH YRCVAEAIAG DTEEKLFCLN FTIIHRRDVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2z64C
Description:	No description for 2z64C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits