YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110804936, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110804936, gi....

Description	E-value	Query Range	Subject Range
gi\|75241002, gi\|... - gi\|75241002\|ref\|ZP_00724891.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|91210029, gi\|... - gi\|91210029\|ref\|YP_540015.1\| hypothetical protein UTI89_C0999 [Escherichia coli UTI89], gi\|91071603\|... gi\|13360469, gi\|... - gi\|15830264\|ref\|NP_309037.1\| hypothetical protein ECs1010 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342716, gi... - gi\|110641124\|ref\|YP_668854.1\| hypothetical protein ECP_0938 [Escherichia coli 536], gi\|110342716\|gb\|... gi\|209774728, gi... - pir\|\|H85618 hypothetical protein ycbL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13360469, gi\|... - gi\|15830264\|ref\|NP_309037.1\| hypothetical protein ECs1010 [Escherichia coli O157:H7], gi\|13360469\|db... gi\|26107354, gi\|... - gi\|26246954\|ref\|NP_752994.1\| hypothetical protein c1069 [Escherichia coli CFT073], gi\|26107354\|gb\|AA... gi\|12514099, gi\|... - gi\|15800788\|ref\|NP_286802.1\| hypothetical protein Z1274 [Escherichia coli O157:H7 EDL933], gi\|125140... gi\|168751191, gi... - gi\|188014715\|gb\|EDU52837.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168757020, gi... - gi\|189355912\|gb\|EDU74331.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168762935, gi... - gi\|189366788\|gb\|EDU85204.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168769923, gi... - gi\|189361174\|gb\|EDU79593.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|187768360, gi... - gi\|187768360\|gb\|EDU32204.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|188998778, gi... - gi\|188998778\|gb\|EDU67764.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|254792126, gi... - gi\|254792126\|ref\|YP_003076963.1\| predicted metal-binding enzyme [Escherichia coli O157:H7 str. TW143... gi\|237707085, gi... - gi\|237707085\|ref\|ZP_04537566.1\| YcbL [Escherichia sp. 3_2_53FAA], gi\|226898295\|gb\|EEH84554.1\| YcbL [... gi\|227838860, gi... - gi\|227884108\|ref\|ZP_04001913.1\| zinc (Zn2+)-dependent hydrolase [Escherichia coli 83972], gi\|2278388... gi\|218364601, gi... - gi\|218557832\|ref\|YP_002390745.1\| putative metal-binding hydrolase [Escherichia coli S88], gi\|2183646... gi\|117623145, gi... - gi\|117623145\|ref\|YP_852058.1\| YcbL [Escherichia coli APEC O1], gi\|115512269\|gb\|ABJ00344.1\| YcbL [Esc... gi\|218426334, gi... - gi\|218688770\|ref\|YP_002396982.1\| putative metal-binding hydrolase [Escherichia coli ED1a], gi\|218426... gi\|168787357, gi... - gi\|189372736\|gb\|EDU91152.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC8... gi\|189375249, gi... - gi\|189375249\|gb\|EDU93665.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC5... gi\|195939658 - gi\|195939658\|ref\|ZP_03085040.1\| YcbL [Escherichia coli O157:H7 str. EC4024] gi\|208806417, gi... - gi\|208806417\|ref\|ZP_03248754.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|208731452, gi... - gi\|208814804\|ref\|ZP_03255983.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|208738068, gi... - gi\|208822583\|ref\|ZP_03262902.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|209395793, gi... - gi\|209395793\|ref\|YP_002269599.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str... gi\|217321429, gi... - gi\|217325208\|ref\|ZP_03441292.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str....	209.0	[0..1]	[215..1]
gi\|206708191, gi... - gi\|207856388\|ref\|YP_002243039.1\| hypothetical protein SEN0901 [Salmonella enterica subsp. enterica s... gi\|224582807, gi... - gi\|224582807\|ref\|YP_002636605.1\| hypothetical protein SPC_0998 [Salmonella enterica subsp. enterica ... gi\|204929977, gi... - gi\|204929977\|ref\|ZP_03220998.1\| metallo-beta-lactamase family protein [Salmonella enterica subsp. en... gi\|205352204, gi... - gi\|205352204\|ref\|YP_002226005.1\| hypothetical protein SG0939 [Salmonella enterica subsp. enterica se... gi\|197940520, gi... - gi\|198246004\|ref\|YP_002214921.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteri... gi\|199603570, gi... - gi\|200391125\|ref\|ZP_03217736.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteric... gi\|197247583, gi... - gi\|197247583\|ref\|YP_002145915.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteri... gi\|197261729, gi... - gi\|197261729\|ref\|ZP_03161803.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteric... gi\|194458000, gi... - gi\|194471636\|ref\|ZP_03077620.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteric... gi\|194737484, gi... - gi\|194737484\|ref\|YP_002114050.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteri... gi\|194446110, gi... - gi\|194446110\|ref\|YP_002040195.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteri... gi\|194450083, gi... - gi\|194450083\|ref\|YP_002044989.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enteri... gi\|16764357, gi\|... - gi\|16764357\|ref\|NP_459972.1\| putative metallo-beta-lactamase [Salmonella typhimurium LT2], gi\|164195... gi\|205346901, gi... - gi\|205346901\|gb\|EDZ33532.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... gi\|195630915, gi... - gi\|195630915\|gb\|EDX49501.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... gi\|197289784, gi... - gi\|197289784\|gb\|EDY29145.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... gi\|205337128, gi... - gi\|205337128\|gb\|EDZ23892.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=ycbL] [protein=putative metallo-beta-lactamase] [protein_id=YP_005236717.1] [location=1046056.... gi\|167994948, gi... - gi\|205327282\|gb\|EDZ14046.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... gi\|62127157, gi\|... - gi\|62179524\|ref\|YP_215941.1\| hypothetical protein SC0954 [Salmonella enterica subsp. enterica serova... gi\|205332464, gi... - gi\|205332464\|gb\|EDZ19228.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se... gi\|161364128, gi... - gi\|161614764\|ref\|YP_001588729.1\| hypothetical protein SPAB_02516 [Salmonella enterica subsp. enteric... gi\|205322462, gi... - gi\|205322462\|gb\|EDZ10301.1\| hydroxyacylglutathione hydrolase [Salmonella enterica subsp. enterica se...	208.0	[0..1]	[215..1]
gi\|83585870, gi\|... - gi\|83585870\|ref\|ZP_00924510.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|188491939, gi... - gi\|75512083\|ref\|ZP_00734668.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|4062494, gi\|8... - gi\|89107777\|ref\|AP_001557.1\| predicted metal-binding enzyme [Escherichia coli str. K-12 substr. W311... YCBL_ECOLI - Hypothetical protein ycbL - Escherichia coli EG13704 - putative metal-binding enzyme / Glyoxalase II homolog, function unknown gi\|169888420, gi... - gi\|170080585\|ref\|YP_001729905.1\| metal-binding protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|238862657, gi... - gi\|238900185\|ref\|YP_002925981.1\| putative metal-binding enzyme [Escherichia coli BW2952], gi\|2388626... EG13704 - putative metal-binding enzyme / Glyoxalase II homolog, function unknown gi\|251784469, gi... - gi\|251784469\|ref\|YP_002998773.1\| hypothetical protein B21_00938 [Escherichia coli BL21], gi\|24237674... gi\|253325088, gi... - gi\|254287849\|ref\|YP_003053597.1\| predicted metal-binding enzyme [Escherichia coli BL21(DE3)], gi\|253... gi\|254161041, gi... - gi\|254161041\|ref\|YP_003044149.1\| predicted metal-binding enzyme [Escherichia coli B str. REL606], gi...	208.0	[0..1]	[215..1]
gi\|194417373, gi... - gi\|83569152\|ref\|ZP_00920611.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Shigella dys...	208.0	[0..1]	[215..1]
gi\|197362877, gi... - gi\|197362877\|ref\|YP_002142514.1\| hypothetical protein SSPA1674 [Salmonella enterica subsp. enterica ... gi\|56413954, gi\|... - gi\|56413954\|ref\|YP_151029.1\| hypothetical protein SPA1801 [Salmonella enterica subsp. enterica serov...	208.0	[0..1]	[215..1]
gi\|75178260, gi\|... - gi\|75178260\|ref\|ZP_00698314.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Shigella boy...	207.0	[0..1]	[215..1]
gi\|82777549, gi\|... - gi\|82777549\|ref\|YP_403898.1\| hypothetical protein SDY_2330 [Shigella dysenteriae Sd197], gi\|81241697...	206.0	[0..1]	[215..1]
gi\|214000538 - gi\|214000538\|ref\|ZP_03411273.1\| hypothetical protein Salmonellentericaenterica_07891 [Salmonella ent... gi\|213852478 - gi\|213852478\|ref\|ZP_03382010.1\| hypothetical protein SentesT_06134 [Salmonella enterica subsp. enter... gi\|213581707 - gi\|213581707\|ref\|ZP_03363533.1\| hypothetical protein SentesTyph_11074 [Salmonella enterica subsp. en... gi\|213160798 - gi\|213160798\|ref\|ZP_03346508.1\| hypothetical protein Salmoneentericaenterica_12368 [Salmonella enter... gi\|213650526 - gi\|213650526\|ref\|ZP_03380579.1\| hypothetical protein SentesTy_26783 [Salmonella enterica subsp. ente... gi\|213620685 - gi\|213620685\|ref\|ZP_03373468.1\| hypothetical protein SentesTyp_25617 [Salmonella enterica subsp. ent... gi\|16502159, gi\|... - gi\|25311010\|pir\|\|AC0616 conserved hypothetical protein ycbL [imported] - Salmonella enterica subsp. ... gi\|29137991, gi\|... - gi\|29142361\|ref\|NP_805703.1\| hypothetical protein t1937 [Salmonella enterica subsp. enterica serovar... gi\|16759866 - gi\|16759866\|ref\|NP_455483.1\| hypothetical protein STY0999 [Salmonella enterica subsp. enterica serov...	206.0	[0..1]	[215..1]
gi\|36785112, gi\|... - gi\|37525684\|ref\|NP_929028.1\| hypothetical protein plu1749 [Photorhabdus luminescens subsp. laumondii...	204.0	[0..1]	[215..1]
gi\|167470986 - gi\|167470986\|ref\|ZP_02335690.1\| metallo-beta-lactamase family protein [Yersinia pestis FV-1] gi\|229903134, gi... - gi\|229903134\|ref\|ZP_04518247.1\| predicted metal-binding enzyme [Yersinia pestis Nepal516], gi\|229678... gi\|165924796, gi... - gi\|165924796\|ref\|ZP_02220628.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Orient... gi\|165991216, gi... - gi\|166009820\|ref\|ZP_02230718.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|166211362, gi... - gi\|166211362\|ref\|ZP_02237397.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|229697747, gi... - gi\|229841381\|ref\|ZP_04461540.1\| predicted metal-binding enzyme [Yersinia pestis biovar Orientalis st... gi\|167399873, gi... - gi\|167399873\|ref\|ZP_02305391.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|229843486, gi... - gi\|229843486\|ref\|ZP_04463632.1\| predicted metal-binding enzyme [Yersinia pestis biovar Orientalis st... gi\|89104662, gi\|... - gi\|89104662\|ref\|ZP_01177199.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia pes... gi\|167419476, gi... - gi\|167419476\|ref\|ZP_02311229.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Orient... gi\|229700783, gi... - gi\|229895860\|ref\|ZP_04511030.1\| predicted metal-binding enzyme [Yersinia pestis Pestoides A], gi\|229... gi\|108778613, gi... - gi\|108806700\|ref\|YP_650616.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis Antiqua], ... gi\|167424028, gi... - gi\|167424028\|ref\|ZP_02315781.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Mediae... gi\|21959651, gi\|... - gi\|22126639\|ref\|NP_670062.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis KIM], gi\|21... gi\|25311006 - pir\|\|AC0172 metallo-beta-lactamase superfamily protein [imported] - Yersinia pestis (strain CO92) gi\|15979458, gi\|... - gi\|218928557\|ref\|YP_002346432.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis CO92], ... gi\|162353592, gi... - gi\|77636029\|ref\|ZP_00798107.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia pes... gi\|45435870, gi\|... - gi\|45441011\|ref\|NP_992550.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis biovar Micr... gi\|149291040, gi... - gi\|149366666\|ref\|ZP_01888700.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis CA88-412... gi\|145211254, gi... - gi\|145599558\|ref\|YP_001163634.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis Pestoid...	204.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYRIIPVTA FSQNCSLIWC EQTRLAALVD PGGDAEKIKQ EVDDSGLTLM QILLTHGHLD  60
   61 HVGAAAELAQ HYGVPVFGPE KEDEFWLQGL PAQSRMFGLE ECQPLTPDRW LNEGDTISIG 120
  121 NVTLQVLHCP GHTPGHVVFF DDRAKLLISG DVIFKGGVGR SDFPRGDHNQ LISSIKDKLL 180
  181 PLGDDVTFIP GHGPLSTLGY ERLHNPFLQD EMPVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.09691
Match:	1xm8A
Description:	X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: