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View Structure Prediction Details

Protein: COX5A_MOUSE, COX...
Organism: Mus musculus
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5A_MOUSE, COX....

Description E-value Query
Range		 Subject
Range
COX5A_BOVIN - Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus GN=COX5A PE=1 SV=2
 255.0 [0..1] [145..1]
COX5A_MACMU - Cytochrome c oxidase subunit 5A, mitochondrial OS=Macaca mulatta GN=COX5A PE=2 SV=1
 255.0 [0..1] [145..1]
COX5A_PANTR - Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan troglodytes GN=COX5A PE=2 SV=1
 251.0 [0..1] [145..1]
gi|123993817 - gi|123993817|gb|ABM84510.1| cytochrome c oxidase subunit Va [synthetic construct]
COX5A - cytochrome c oxidase subunit Va
 249.0 [0..1] [145..1]
COX5A_RAT - Cytochrome c oxidase subunit 5A, mitochondrial OS=Rattus norvegicus GN=Cox5a PE=1 SV=1
 249.0 [0..16] [145..17]
COX5A_SAISC - Cytochrome c oxidase subunit 5A, mitochondrial OS=Saimiri sciureus GN=COX5A PE=2 SV=1
 248.0 [0..1] [145..1]
gi|61358189, gi|... - gi|61358189|gb|AAX41522.1| cytochrome c oxidase subunit Va [synthetic construct], gi|60815694|gb|AAX...
 247.0 [0..1] [145..1]
gi|73997516 - gi|73997516|ref|XP_853952.1| PREDICTED: similar to Cytochrome c oxidase polypeptide Va, mitochondria...
 239.0 [0..1] [145..1]
COX5A_MOUSE - Cytochrome c oxidase subunit 5A, mitochondrial OS=Mus musculus GN=Cox5a PE=1 SV=2
 236.0 [0..16] [145..17]

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Predicted Domain #1
Region A:
Residues: [1-145] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAALRRCT AAAARGLLHP ASAPSPAAAV CSIRCYSHGS HETDEEFDAR WVTYFNKPDI  60
   61 DAWELRKGMN TLVGYDLVPE PKIIDAALRA CRRLNDFASA VRILEVVKDK AGPHKEIYPY 120
  121 VIQELRPTLN ELGISTPEEL GLDKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 1occE
Description: Cytochrome c oxidase subunit E
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 3.17508902275132 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 3.17508902275132 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 3.17508902275132 bayes_pls_golite062009
heme-copper terminal oxidase activity 3.01926404256257 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.48623828492701 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.43546484273392 bayes_pls_golite062009
cation transmembrane transporter activity 1.40887178381842 bayes_pls_golite062009
ion transmembrane transporter activity 1.38049510826628 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.30022495955501 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.26811367723859 bayes_pls_golite062009
transmembrane transporter activity 1.25458305670463 bayes_pls_golite062009
transporter activity 1.24576383861713 bayes_pls_golite062009
substrate-specific transporter activity 1.22524434109813 bayes_pls_golite062009
oxidoreductase activity 0.9065222124517 bayes_pls_golite062009
catalytic activity 0.279408230112184 bayes_pls_golite062009
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