YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107099929
Organism:	Pseudomonas aeruginosa PACS2
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107099929.

Description	E-value	Query Range	Subject Range
gi\|95109365 - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ... gi\|104780378, gi... - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ...	2.0E-39	[1..126]	[1..128]
gi\|24982843, gi\|... - gi\|26988115\|ref\|NP_743540.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida KT2440], gi\|24... tr\|E4RHI8\|E4RHI8... - PcaC OS=Pseudomonas putida (strain BIRD-1) GN=pcaC PE=4 SV=1	3.0E-39	[1..126]	[1..128]
gi\|152989432, gi... - gi\|94416236\|ref\|ZP_01296066.1\| hypothetical protein PaerP_01002079 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-39	[1..128]	[1..128]
gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], r... gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], g...	4.0E-39	[1..128]	[1..130]
gi\|23468817, gi\|... - gi\|66045366\|ref\|YP_235207.1\| carboxymuconolactone decarboxylase [Pseudomonas syringae pv. syringae B...	5.0E-39	[2..126]	[4..128]
gi\|148513605, gi... - gi\|82738524\|ref\|ZP_00901355.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida F1], gi\|8271...	8.0E-39	[1..126]	[1..128]
gi\|5091484 - gi\|5091484\|gb\|AAD39557.1\| PcaC-like protein [Pseudomonas putida] tr\|I7BPT6\|I7BPT6... - PcaC-like protein OS=Pseudomonas putida (strain DOT-T1E) GN=pcaC PE=4 SV=1	9.0E-39	[1..126]	[1..128]
gi\|71554175, gi\|... - gi\|71733622\|ref\|YP_274319.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. phaseoli...	1.0E-38	[2..126]	[4..128]
gi\|116053945, gi... - gi\|32043400\|ref\|ZP_00140662.1\| COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarb...	1.0E-38	[1..127]	[1..129]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQGKTGLE IRREVMGDAF VERAMGNATA FTQPLQDFVN EHAWGSVWAR EALPRKTRSL  60
   61 ITLAALTALK CPQELKGHVR GALNNGCTVE EIREALLHCA VYAGVPAAID AFRAAQEAID 120
  121 TWQGEQPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2af7A
Description:	Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-carboxymuconolactone decarboxylase activity	2.79801226397748	bayes_pls_golite062009
catalytic activity	1.59852263091408	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: