YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104072
Organism:	Pseudomonas aeruginosa PACS2
Length:	627 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104072.

Description	E-value	Query Range	Subject Range
THIC_PSEA7 - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain PA7) GN=thiC PE=3 SV=1	0.0	[1..627]	[1..627]
THIC_PSEAB - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thiC PE=3 SV=1	0.0	[1..627]	[1..627]
THIC_PSEE4 - Phosphomethylpyrimidine synthase OS=Pseudomonas entomophila (strain L48) GN=thiC PE=3 SV=1 gi\|95112889 - gi\|95112889\|emb\|CAK17617.1\| hydroxymethylpyrimidine moiety synthesis in thiamin biosynthesis [Pseudo...	0.0	[1..627]	[1..626]
THIC_PSEPK - Phosphomethylpyrimidine synthase OS=Pseudomonas putida (strain KT2440) GN=thiC PE=3 SV=1	0.0	[1..627]	[1..626]
gi\|67157637 - gi\|67157637\|ref\|ZP_00418832.1\| Thiamine biosynthesis protein ThiC [Azotobacter vinelandii AvOP] gi\|67157637, gi\|... - gi\|67157637\|ref\|ZP_00418832.1\| Thiamine biosynthesis protein ThiC [Azotobacter vinelandii AvOP], gi\|...	0.0	[3..627]	[28..652]
tr\|I7C1X5\|I7C1X5... - Phosphomethylpyrimidine synthase OS=Pseudomonas putida (strain DOT-T1E) GN=thiC PE=3 SV=1 THIC_PSEP1 - Phosphomethylpyrimidine synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=thiC PE=3 SV=1	0.0	[1..627]	[1..626]
THIC_SACD2 - Phosphomethylpyrimidine synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) ...	0.0	[5..627]	[7..638]
THIC_PSEPF - Phosphomethylpyrimidine synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=thiC PE=3 SV=1	0.0	[1..627]	[1..629]
THIC_PSEF5 - Phosphomethylpyrimidine synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=thiC PE=...	0.0	[1..627]	[1..629]
gi\|89080814, gi\|... - gi\|89094948\|ref\|ZP_01167879.1\| thiamine biosynthesis protein ThiC [Oceanospirillum sp. MED92], gi\|89...	0.0	[3..627]	[5..631]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATQKNNIT RLEQLDRQST QPFPNSRKVY LTGSRPDIRV PVREISLADT PTAFGGEKNP  60
   61 PVFVYDTSGP YTDPEVRIDL RKGLPDVRSR WIDERGDTEI LPGLTSEFGQ ARLADASLDA 120
  121 LRFAHVRTPR RAKPGANVSQ MHYAKKGIIT PEMEYIAIRE NMKLQEARAA GLLDQQHPGH 180
  181 SFGAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPKEITPEFV REEVARGRAI IPANINHTEL EPMIIGRNFL VKINGNIGNS ALGSSIEEEV  60
   61 EKLTWGIRWG ADTVMDLSTG KHIHETREWI LRNSPVPIGT VPIYQALEKV NGVAEDLTWE 120
  121 IFRDTLIEQA EQGVDYFTIH AGVLLRYVPL TAKRVTGIVS RGGSIMAKWC LAHHQENFLY 180
  181 THFEEICEIM KAYDVSFSLG DGLR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [390-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGSVADANDA AQFGELETLG ELTKIAWKHD VQVMIEGPGH VPMQLIKENM DKQLECCDEA  60
   61 PFYTLGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [457-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTTDIAPGYD HITSGIGAAM IGWFGCAMLC YVTPKEHLGL PNKDDVKTGI ITYKIAAHAA  60
   61 DLAKGHPGAQ IRDNALSKAR FEFRWEDQFN LGLDPDTARA FHDETLPKDS AKVAHFCSMC 120
  121 GPKFCSMKIT QEVRDYAKEN GLSDESKAIE AGFQEQAARF KDEGSVIYRQ V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits